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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of RNase III mutant E110Q from Aquifex aeolicus complexed with double stranded RNA at 2.1-Angstrom Resolution

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011yz9_C_C1_G2AAAAA00650.25 AA00
021yz9_C_G2_A3AAAAA00870.14 AA00
031yz9_C_A3_A4AAAAA00950.11 AA00
041yz9_C_A4_C5AAAAA00760.21 AA00
051yz9_C_C5_U6AAAAA00630.21 AA00
061yz9_C_U6_U7AAAAA00900.14 AA00
071yz9_C_U7_C8AAAAA00850.18 AA00
081yz9_C_C8_G9AAAAA00590.25 AA00
091yz9_C_G9_C10AAAAA00940.11 AA00
101yz9_C_C10_G11AAAAA00850.15 AA00
111yz9_D_C12_G13AAAAA00840.18 AA00
121yz9_D_G13_A14AAAAA00620.25 AA00
131yz9_D_A14_A15AAAAA00910.10 AA00
141yz9_D_A15_C16AAAAA00700.30 AA00
151yz9_D_C16_U17AAAAA00840.24 AA00
161yz9_D_U17_U18AAAAA00940.17 AA00
171yz9_D_U18_C19AAAAA00840.15 AA00
181yz9_D_C19_G20AAAAA00940.17 AA00
191yz9_D_G20_C21AAAAA00750.25 AA00
201yz9_D_C21_G22AAAAA00860.11 AA00
211yz9_E_C1_G2AAAAA00830.21 AA00
221yz9_E_G2_A3AAAAA00690.23 AA00
231yz9_E_A3_A4AAAAA00960.10 AA00
241yz9_E_A4_C5AAAAA00700.27 AA00
251yz9_E_C5_U6AAAAA00830.24 AA00
261yz9_E_U6_U7AAAAA00860.19 AA00
271yz9_E_U7_C8AAAAA00880.14 AA00
281yz9_E_C8_G9AAAAA00890.16 AA00
291yz9_E_G9_C10AAAAA00910.15 AA00
301yz9_E_C10_G11AAAAA00760.24 AA00
311yz9_F_C12_G13AAAAA00790.18 AA00
321yz9_F_G13_A14AAAAA00900.18 AA00
331yz9_F_A14_A15AAAAA00900.16 AA00
341yz9_F_A15_C16AAAAA00870.14 AA00
351yz9_F_C16_U17AAAAA00700.19 AA00
361yz9_F_U17_U18AAAAA00930.14 AA00
371yz9_F_U18_C19AAAAA00870.17 AA00
381yz9_F_C19_G20AAAAA00730.22 AA00
391yz9_F_G20_C21AAAAA00930.14 AA00
401yz9_F_C21_G22AAAAA00830.15 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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