Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of RNase III mutant E110K from Aquifex aeolicus complexed with double-stranded RNA at 2.9-Angstrom Resolution

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011yyo_C_C1_G2AAAAA00800.21 AA00
021yyo_C_G2_C3AAAAA00950.14 AA00
031yyo_C_C3_G4AAAAA00930.17 AA00
041yyo_C_G4_A5AAwAA01610.19 AA01
051yyo_C_A5_A6AAAAA08620.26 AA08
061yyo_C_A6_U7AAAAA00820.19 AA00
071yyo_C_U7_U8AAAAA00850.18 AA00
081yyo_C_U8_C9AAAAA00820.16 AA00
091yyo_C_C9_G10AAAAA00780.14 AA00
101yyo_C_G10_C11AAAAA00940.12 AA00
111yyo_C_C11_G12AAAAA00900.13 AA00
121yyo_D_C13_G14AAAAA00880.13 AA00
131yyo_D_G14_C15AAAAA00800.17 AA00
141yyo_D_C15_G16AAAAA00740.10 AA00
151yyo_D_G16_A17AAAAA00930.10 AA00
161yyo_D_A17_A18AAAAA00980.06 AA00
171yyo_D_A18_U19AAAAA00940.10 AA00
181yyo_D_U19_U20AAAAA00880.32 AA00
191yyo_D_U20_C21AAAAA00930.14 AA00
201yyo_D_C21_G22AAAAA00840.14 AA00
211yyo_D_G22_C23AAAAA08870.27 AA08
221yyo_D_C23_G24AAAAA00860.16 AA00
231yyo_E_C1_G2AAAAA04230.59 AA04
241yyo_E_G2_C3AAAAA00880.14 AA00
251yyo_E_C3_G4AAAAA00790.23 AA00
261yyo_E_G4_A5AAwAA01980.14 AA01
271yyo_E_A5_A6AAAAA00780.16 AA00
281yyo_E_A6_U7AAAAA00930.09 AA00
291yyo_E_U7_U8AAAAA08830.21 AA08
301yyo_E_U8_C9AAAAA00810.19 AA00
311yyo_E_C9_G10AAAAA00760.21 AA00
321yyo_E_G10_C11AAAAA00910.19 AA00
331yyo_E_C11_G12AAAAA00950.13 AA00
341yyo_F_C13_G14AAAAA00650.26 AA00
351yyo_F_G14_C15AAAAA00680.21 AA00
361yyo_F_C15_G16AAAAA00880.16 AA00
371yyo_F_G16_A17AAAAA00700.23 AA00
381yyo_F_A17_A18AAAAA00670.20 AA00
391yyo_F_A18_U19AAAAA00930.18 AA00
401yyo_F_U19_U20AAwAA01820.16 AA01
411yyo_F_U20_C21AAAAA08880.14 AA08
421yyo_F_C21_G22AAAAA00790.19 AA00
431yyo_F_G22_C23AAAAA00930.10 AA00
441yyo_F_C23_G24AAAAA00890.07 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N