Conformers:
ABBIImiBZICOPNSYNN
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Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1yty_C_U1_G2 | NAN | NANT | 0 | 0.88 |
| 02 | 1yty_C_G2_C3 | AAA | AA00 | 79 | 0.26 |
| 03 | 1yty_C_C3_U4 | AAA | AA00 | 87 | 0.19 |
| 04 | 1yty_C_U4_G5 | AAA | AA08 | 71 | 0.30 |
| 05 | 1yty_C_G5_U6 | AAA | AA00 | 64 | 0.20 |
| 06 | 1yty_C_U6_U7 | NAN | NANT | 0 | 0.42 |
| 07 | 1yty_C_U7_U8 | NAN | NANT | 0 | 0.43 |
| 08 | 1yty_C_U8_U9 | NAN | NANT | 0 | 0.81 |
| 09 | 1yty_D_U1_G2 | NAN | NANT | 0 | 0.94 |
| 10 | 1yty_D_G2_C3 | AAA | AA00 | 69 | 0.30 |
| 11 | 1yty_D_C3_U4 | AAA | AA00 | 91 | 0.23 |
| 12 | 1yty_D_U4_G5 | AAw | AA06 | 39 | 0.24 |
| 13 | 1yty_D_G5_U6 | AAA | AA00 | 10 | 0.56 |
| 14 | 1yty_D_U6_U7 | NAN | NANT | 0 | 1.00 |
| 15 | 1yty_D_U7_U8 | NAN | NANT | 0 | 0.62 |
| 16 | 1yty_D_U8_U9 | NAN | NANT | 0 | 0.55 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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