DNATCO v4.1: results

Solution structure of the Neurospora VS ribozyme stem-loop V in the presence of MgCl2 with modeling of bound manganese ions

Results of the assignment of 176 detected steps in 11 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	1yn2-m10_A_G690_C691	NAN	NANT	0	0.72	AA07
002	1yn2-m11_A_G690_C691	NAN	NANT	0	0.67	AB04
003	1yn2-m1_A_G690_C691	NAN	NANT	0	0.58	AA12
004	1yn2-m2_A_G690_C691	NAN	NANT	0	0.65	AA12
005	1yn2-m3_A_G690_C691	NAN	NANT	0	0.79	AA07
006	1yn2-m4_A_G690_C691	NAN	NANT	0	0.64	AA12
007	1yn2-m5_A_G690_C691	NAN	NANT	0	0.62	AA12
008	1yn2-m6_A_G690_C691	AAA	AA08	14	0.47	AA08
009	1yn2-m7_A_G690_C691	AAA	AA08	8	0.63	AA08
010	1yn2-m8_A_G690_C691	AAA	AA08	14	0.49	AA08
011	1yn2-m9_A_G690_C691	AAA	AA08	13	0.62	AA08
012	1yn2-m10_A_C691_G692	NAN	NANT	0	0.45	AA03
013	1yn2-m11_A_C691_G692	AAA	AA08	29	0.44	AA08
014	1yn2-m1_A_C691_G692	AAA	AA08	47	0.30	AA08
015	1yn2-m2_A_C691_G692	AAA	AA08	25	0.38	AA08
016	1yn2-m3_A_C691_G692	AAA	AA03	36	0.37	AA03
017	1yn2-m4_A_C691_G692	AAA	AA08	33	0.30	AA08
018	1yn2-m5_A_C691_G692	AAA	AA08	20	0.50	AA08
019	1yn2-m6_A_C691_G692	AAA	AA09	55	0.18	AA09
020	1yn2-m7_A_C691_G692	AAA	AA08	39	0.32	AA08
021	1yn2-m8_A_C691_G692	NAN	NANT	0	0.72	AA07
022	1yn2-m9_A_C691_G692	AAA	AA03	32	0.43	AA03
023	1yn2-m10_A_G692_A693	AAA	AA00	32	0.35	AA00
024	1yn2-m11_A_G692_A693	AAA	AA00	40	0.32	AA00
025	1yn2-m1_A_G692_A693	AAA	AA00	53	0.26	AA00
026	1yn2-m2_A_G692_A693	AAA	AA00	55	0.26	AA00
027	1yn2-m3_A_G692_A693	AAA	AA00	29	0.36	AA00
028	1yn2-m4_A_G692_A693	AAA	AA00	31	0.35	AA00
029	1yn2-m5_A_G692_A693	AAA	AA00	59	0.23	AA00
030	1yn2-m6_A_G692_A693	AAA	AA00	44	0.27	AA00
031	1yn2-m7_A_G692_A693	AAA	AA00	32	0.36	AA00
032	1yn2-m8_A_G692_A693	AAA	AA00	53	0.27	AA00
033	1yn2-m9_A_G692_A693	AAA	AA00	9	0.34	AA00
034	1yn2-m10_A_A693_G694	AAA	AA00	36	0.38	AA00
035	1yn2-m11_A_A693_G694	AAA	AA00	45	0.41	AA00
036	1yn2-m1_A_A693_G694	AAA	AA08	45	0.37	AA08
037	1yn2-m2_A_A693_G694	AAA	AA08	39	0.42	AA08
038	1yn2-m3_A_A693_G694	AAA	AA00	31	0.47	AA00
039	1yn2-m4_A_A693_G694	AAA	AA00	50	0.36	AA00
040	1yn2-m5_A_A693_G694	AAA	AA00	48	0.36	AA00
041	1yn2-m6_A_A693_G694	AAA	AA00	44	0.42	AA00
042	1yn2-m7_A_A693_G694	AAA	AA08	50	0.25	AA08
043	1yn2-m8_A_A693_G694	AAA	AA08	30	0.39	AA08
044	1yn2-m9_A_A693_G694	AAA	AA08	37	0.38	AA08
045	1yn2-m10_A_G694_U695	AAA	AA08	30	0.44	AA08
046	1yn2-m11_A_G694_U695	AAA	AA00	14	0.34	AA00
047	1yn2-m1_A_G694_U695	AAA	AA00	43	0.29	AA00
048	1yn2-m2_A_G694_U695	AAA	AA00	15	0.31	AA00
049	1yn2-m3_A_G694_U695	AAA	AA04	39	0.38	AA04
050	1yn2-m4_A_G694_U695	AAA	AA00	42	0.28	AA00
051	1yn2-m5_A_G694_U695	AAA	AA00	49	0.28	AA00
052	1yn2-m6_A_G694_U695	AAA	AA00	29	0.30	AA00
053	1yn2-m7_A_G694_U695	AAA	AA00	50	0.25	AA00
054	1yn2-m8_A_G694_U695	AAA	AA00	46	0.35	AA00
055	1yn2-m9_A_G694_U695	AAA	AA00	48	0.23	AA00
056	1yn2-m10_A_U695_U696	NAN	NANT	0	0.81	AA04
057	1yn2-m11_A_U695_U696	NAN	NANT	0	0.70	AA04
058	1yn2-m1_A_U695_U696	AAA	AA04	16	0.67	AA04
059	1yn2-m2_A_U695_U696	AAA	AA04	15	0.69	AA04
060	1yn2-m3_A_U695_U696	AAA	AA08	14	0.41	AA08
061	1yn2-m4_A_U695_U696	AAA	AA04	11	0.71	AA04
062	1yn2-m5_A_U695_U696	AAA	AA04	20	0.62	AA04
063	1yn2-m6_A_U695_U696	AAA	AA04	36	0.57	AA04
064	1yn2-m7_A_U695_U696	AAA	AA08	22	0.49	AA08
065	1yn2-m8_A_U695_U696	AAA	AA08	13	0.53	AA08
066	1yn2-m9_A_U695_U696	AAA	AA08	14	0.56	AA08
067	1yn2-m10_A_U696_G697	NAN	NANT	0	0.54	OP03
068	1yn2-m11_A_U696_G697	NAN	NANT	0	0.49	OP04
069	1yn2-m1_A_U696_G697	NAN	NANT	0	0.55	OP04
070	1yn2-m2_A_U696_G697	NAN	NANT	0	0.59	OP04
071	1yn2-m3_A_U696_G697	NAN	NANT	0	0.77	OP03
072	1yn2-m4_A_U696_G697	NAN	NANT	0	0.53	OP03
073	1yn2-m5_A_U696_G697	NAN	NANT	0	0.71	OP04
074	1yn2-m6_A_U696_G697	NAN	NANT	0	0.78	OP04
075	1yn2-m7_A_U696_G697	OPN	OP04	13	0.47	OP04
076	1yn2-m8_A_U696_G697	NAN	NANT	0	0.88	OP04
077	1yn2-m9_A_U696_G697	NAN	NANT	0	0.56	OP04
078	1yn2-m10_A_G697_A698	AAw	AA05	28	0.33	AA05
079	1yn2-m11_A_G697_A698	AAw	AA01	37	0.45	AA01
080	1yn2-m1_A_G697_A698	AAA	AA04	39	0.56	AA04
081	1yn2-m2_A_G697_A698	AAw	AA05	28	0.31	AA05
082	1yn2-m3_A_G697_A698	AAw	AA01	28	0.44	AA01
083	1yn2-m4_A_G697_A698	AAA	AA08	36	0.49	AA08
084	1yn2-m5_A_G697_A698	AAA	AA04	38	0.59	AA04
085	1yn2-m6_A_G697_A698	AAA	AA04	26	0.65	AA04
086	1yn2-m7_A_G697_A698	AAw	AA05	33	0.31	AA05
087	1yn2-m8_A_G697_A698	NAN	NANT	0	0.76	AA04
088	1yn2-m9_A_G697_A698	AAA	AA04	22	0.66	AA04
089	1yn2-m10_A_A698_C699	AAw	AA01	51	0.27	AA01
090	1yn2-m11_A_A698_C699	AAw	AA01	62	0.22	AA01
091	1yn2-m1_A_A698_C699	AAA	AA00	46	0.31	AA00
092	1yn2-m2_A_A698_C699	AAA	AA00	38	0.32	AA00
093	1yn2-m3_A_A698_C699	AAw	AA01	48	0.29	AA01
094	1yn2-m4_A_A698_C699	AAw	AA01	73	0.17	AA01
095	1yn2-m5_A_A698_C699	AAw	AA01	64	0.23	AA01
096	1yn2-m6_A_A698_C699	AAA	AA00	36	0.27	AA00
097	1yn2-m7_A_A698_C699	AAA	AA00	38	0.41	AA00
098	1yn2-m8_A_A698_C699	AAA	AA04	78	0.27	AA04
099	1yn2-m9_A_A698_C699	AAw	AA01	60	0.27	AA01
100	1yn2-m10_A_C699_U700	NAN	NANT	0	0.82	OP03
101	1yn2-m11_A_C699_U700	NAN	NANT	0	0.72	OP04
102	1yn2-m1_A_C699_U700	NAN	NANT	0	0.69	OP04
103	1yn2-m2_A_C699_U700	NAN	NANT	0	0.81	OP03
104	1yn2-m3_A_C699_U700	NAN	NANT	0	0.69	OP04
105	1yn2-m4_A_C699_U700	NAN	NANT	0	1.56	AA11
106	1yn2-m5_A_C699_U700	NAN	NANT	0	0.83	OP03
107	1yn2-m6_A_C699_U700	NAN	NANT	0	1.08	OP14
108	1yn2-m7_A_C699_U700	NAN	NANT	0	0.56	OP04
109	1yn2-m8_A_C699_U700	NAN	NANT	0	0.66	OP03
110	1yn2-m9_A_C699_U700	NAN	NANT	0	1.65	AA11
111	1yn2-m10_A_U700_A701	NAN	NANT	0	0.90	OP12
112	1yn2-m11_A_U700_A701	NAN	NANT	0	0.94	OP11
113	1yn2-m1_A_U700_A701	NAN	NANT	0	0.79	OP11
114	1yn2-m2_A_U700_A701	NAN	NANT	0	0.86	OP12
115	1yn2-m3_A_U700_A701	NAN	NANT	0	1.79	OP01
116	1yn2-m4_A_U700_A701	NAN	NANT	0	1.69	OP01
117	1yn2-m5_A_U700_A701	NAN	NANT	0	0.88	OP11
118	1yn2-m6_A_U700_A701	NAN	NANT	0	1.55	OP01
119	1yn2-m7_A_U700_A701	NAN	NANT	0	0.90	OP11
120	1yn2-m8_A_U700_A701	NAN	NANT	0	0.67	OP12
121	1yn2-m9_A_U700_A701	NAN	NANT	0	1.63	OP29
122	1yn2-m10_A_A701_C702	AAA	AA08	17	0.56	AA08
123	1yn2-m11_A_A701_C702	AAA	AA08	30	0.40	AA08
124	1yn2-m1_A_A701_C702	AAA	AA08	29	0.42	AA08
125	1yn2-m2_A_A701_C702	AAA	AA08	27	0.43	AA08
126	1yn2-m3_A_A701_C702	AAA	AA08	33	0.43	AA08
127	1yn2-m4_A_A701_C702	AAA	AA08	31	0.45	AA08
128	1yn2-m5_A_A701_C702	AAA	AA08	22	0.41	AA08
129	1yn2-m6_A_A701_C702	AAA	AA08	30	0.39	AA08
130	1yn2-m7_A_A701_C702	AAA	AA08	24	0.34	AA08
131	1yn2-m8_A_A701_C702	AAA	AA08	23	0.39	AA08
132	1yn2-m9_A_A701_C702	AAA	AA08	29	0.40	AA08
133	1yn2-m10_A_C702_U703	AAA	AA00	45	0.28	AA00
134	1yn2-m11_A_C702_U703	AAA	AA00	29	0.36	AA00
135	1yn2-m1_A_C702_U703	AAA	AA00	25	0.32	AA00
136	1yn2-m2_A_C702_U703	AAA	AA00	26	0.35	AA00
137	1yn2-m3_A_C702_U703	AAA	AA00	12	0.42	AA00
138	1yn2-m4_A_C702_U703	AAA	AA00	25	0.35	AA00
139	1yn2-m5_A_C702_U703	AAA	AA00	37	0.30	AA00
140	1yn2-m6_A_C702_U703	AAA	AA00	55	0.30	AA00
141	1yn2-m7_A_C702_U703	AAA	AA00	19	0.42	AA00
142	1yn2-m8_A_C702_U703	AAA	AA00	58	0.22	AA00
143	1yn2-m9_A_C702_U703	AAA	AA08	27	0.37	AA08
144	1yn2-m10_A_U703_C704	AAA	AA00	68	0.28	AA00
145	1yn2-m11_A_U703_C704	AAA	AA00	69	0.21	AA00
146	1yn2-m1_A_U703_C704	AAA	AA08	63	0.25	AA08
147	1yn2-m2_A_U703_C704	AAA	AA08	40	0.34	AA08
148	1yn2-m3_A_U703_C704	AAA	AA00	66	0.24	AA00
149	1yn2-m4_A_U703_C704	AAA	AA08	48	0.29	AA08
150	1yn2-m5_A_U703_C704	AAA	AA00	64	0.23	AA00
151	1yn2-m6_A_U703_C704	AAA	AA00	64	0.28	AA00
152	1yn2-m7_A_U703_C704	AAA	AA00	60	0.26	AA00
153	1yn2-m8_A_U703_C704	AAA	AA00	67	0.22	AA00
154	1yn2-m9_A_U703_C704	AAA	AA08	48	0.34	AA08
155	1yn2-m10_A_C704_G705	AAA	AA03	40	0.39	AA03
156	1yn2-m11_A_C704_G705	NAN	NANT	0	0.60	AB04
157	1yn2-m1_A_C704_G705	AAu	AA12	26	0.46	AA12
158	1yn2-m2_A_C704_G705	AAA	AA08	10	0.64	AA08
159	1yn2-m3_A_C704_G705	AAA	AA00	9	0.46	AA00
160	1yn2-m4_A_C704_G705	AAu	AA12	16	0.43	AA12
161	1yn2-m5_A_C704_G705	NAN	NANT	0	0.60	AA12
162	1yn2-m6_A_C704_G705	AAu	AA12	16	0.45	AA12
163	1yn2-m7_A_C704_G705	AAu	AA12	16	0.32	AA12
164	1yn2-m8_A_C704_G705	AAA	AA04	26	0.67	AA04
165	1yn2-m9_A_C704_G705	AAu	AA12	28	0.30	AA12
166	1yn2-m10_A_G705_C706	AAA	AA08	35	0.43	AA08
167	1yn2-m11_A_G705_C706	AAA	AA02	9	0.43	AA02
168	1yn2-m1_A_G705_C706	AAA	AA00	35	0.28	AA00
169	1yn2-m2_A_G705_C706	AAA	AA04	23	0.68	AA04
170	1yn2-m3_A_G705_C706	AAA	AA00	28	0.39	AA00
171	1yn2-m4_A_G705_C706	AAA	AA00	39	0.36	AA00
172	1yn2-m5_A_G705_C706	AAA	AA00	26	0.35	AA00
173	1yn2-m6_A_G705_C706	AAA	AA00	42	0.32	AA00
174	1yn2-m7_A_G705_C706	AAA	AA00	40	0.31	AA00
175	1yn2-m8_A_G705_C706	AAA	AA00	28	0.39	AA00
176	1yn2-m9_A_G705_C706	AAA	AA00	21	0.42	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 176 detected steps in 11 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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