DNATCO v4.1: results

Solution structure of the VS ribozyme stem-loop V in the presence of MgCl2

Results of the assignment of 176 detected steps in 11 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	1yn1-m10_A_G690_C691	NAN	NANT	0	0.60	AA08
002	1yn1-m11_A_G690_C691	AAA	AA08	6	0.57	AA08
003	1yn1-m1_A_G690_C691	NAN	NANT	0	0.58	AA12
004	1yn1-m2_A_G690_C691	AAA	AA00	13	0.48	AA00
005	1yn1-m3_A_G690_C691	AAA	AA08	9	0.53	AA08
006	1yn1-m4_A_G690_C691	AAA	AA08	11	0.55	AA08
007	1yn1-m5_A_G690_C691	AAA	AA00	9	0.54	AA00
008	1yn1-m6_A_G690_C691	AAA	AA08	16	0.50	AA08
009	1yn1-m7_A_G690_C691	AAA	AA08	12	0.54	AA08
010	1yn1-m8_A_G690_C691	NAN	NANT	0	0.76	AA07
011	1yn1-m9_A_G690_C691	AAA	AA08	13	0.50	AA08
012	1yn1-m10_A_C691_G692	NAN	NANT	0	0.56	AA08
013	1yn1-m11_A_C691_G692	AAA	AA08	48	0.25	AA08
014	1yn1-m1_A_C691_G692	AAA	AA08	31	0.33	AA08
015	1yn1-m2_A_C691_G692	AAA	AA08	25	0.39	AA08
016	1yn1-m3_A_C691_G692	AAA	AA08	44	0.26	AA08
017	1yn1-m4_A_C691_G692	AAA	AA08	24	0.43	AA08
018	1yn1-m5_A_C691_G692	AAA	AA08	31	0.37	AA08
019	1yn1-m6_A_C691_G692	AAA	AA08	25	0.41	AA08
020	1yn1-m7_A_C691_G692	AAA	AA08	20	0.35	AA08
021	1yn1-m8_A_C691_G692	AAA	AA08	39	0.32	AA08
022	1yn1-m9_A_C691_G692	NAN	NANT	0	0.60	AA03
023	1yn1-m10_A_G692_A693	AAA	AA00	39	0.32	AA00
024	1yn1-m11_A_G692_A693	AAA	AA00	35	0.34	AA00
025	1yn1-m1_A_G692_A693	AAA	AA00	37	0.34	AA00
026	1yn1-m2_A_G692_A693	AAA	AA00	27	0.37	AA00
027	1yn1-m3_A_G692_A693	AAA	AA00	42	0.29	AA00
028	1yn1-m4_A_G692_A693	AAA	AA00	39	0.34	AA00
029	1yn1-m5_A_G692_A693	AAA	AA00	42	0.31	AA00
030	1yn1-m6_A_G692_A693	AAA	AA00	39	0.33	AA00
031	1yn1-m7_A_G692_A693	AAA	AA00	35	0.32	AA00
032	1yn1-m8_A_G692_A693	AAA	AA00	20	0.41	AA00
033	1yn1-m9_A_G692_A693	AAA	AA00	18	0.39	AA00
034	1yn1-m10_A_A693_G694	AAA	AA08	38	0.41	AA08
035	1yn1-m11_A_A693_G694	AAA	AA08	44	0.30	AA08
036	1yn1-m1_A_A693_G694	AAA	AA08	38	0.36	AA08
037	1yn1-m2_A_A693_G694	AAA	AA00	25	0.41	AA00
038	1yn1-m3_A_A693_G694	AAA	AA08	41	0.39	AA08
039	1yn1-m4_A_A693_G694	AAA	AA08	44	0.38	AA08
040	1yn1-m5_A_A693_G694	AAA	AA00	53	0.33	AA00
041	1yn1-m6_A_A693_G694	AAA	AA08	40	0.33	AA08
042	1yn1-m7_A_A693_G694	AAA	AA08	30	0.40	AA08
043	1yn1-m8_A_A693_G694	AAA	AA00	52	0.30	AA00
044	1yn1-m9_A_A693_G694	AAA	AA08	33	0.46	AA08
045	1yn1-m10_A_G694_U695	AAA	AA00	19	0.31	AA00
046	1yn1-m11_A_G694_U695	AAA	AA00	54	0.28	AA00
047	1yn1-m1_A_G694_U695	AAA	AA08	34	0.41	AA08
048	1yn1-m2_A_G694_U695	AAA	AA08	14	0.50	AA08
049	1yn1-m3_A_G694_U695	AAA	AA00	50	0.27	AA00
050	1yn1-m4_A_G694_U695	AAA	AA00	23	0.36	AA00
051	1yn1-m5_A_G694_U695	AAA	AA00	39	0.29	AA00
052	1yn1-m6_A_G694_U695	AAA	AA00	38	0.36	AA00
053	1yn1-m7_A_G694_U695	AAA	AA00	12	0.29	AA00
054	1yn1-m8_A_G694_U695	AAA	AA00	60	0.22	AA00
055	1yn1-m9_A_G694_U695	AAA	AA00	52	0.24	AA00
056	1yn1-m10_A_U695_U696	AAA	AA08	15	0.52	AA08
057	1yn1-m11_A_U695_U696	NAN	NANT	0	0.54	AA04
058	1yn1-m1_A_U695_U696	AAA	AA04	45	0.57	AA04
059	1yn1-m2_A_U695_U696	AAA	AA04	28	0.59	AA04
060	1yn1-m3_A_U695_U696	AAA	AA04	24	0.57	AA04
061	1yn1-m4_A_U695_U696	NAN	NANT	0	0.72	AA04
062	1yn1-m5_A_U695_U696	AAA	AA04	54	0.48	AA04
063	1yn1-m6_A_U695_U696	AAA	AA04	19	0.61	AA04
064	1yn1-m7_A_U695_U696	AAA	AA04	20	0.78	AA04
065	1yn1-m8_A_U695_U696	AAA	AA04	28	0.65	AA04
066	1yn1-m9_A_U695_U696	AAA	AA04	14	0.73	AA04
067	1yn1-m10_A_U696_G697	NAN	NANT	0	0.32	OP04
068	1yn1-m11_A_U696_G697	NAN	NANT	0	0.30	OP04
069	1yn1-m1_A_U696_G697	OPN	OP04	9	0.47	OP04
070	1yn1-m2_A_U696_G697	NAN	NANT	0	0.58	OP03
071	1yn1-m3_A_U696_G697	NAN	NANT	0	0.59	OP04
072	1yn1-m4_A_U696_G697	NAN	NANT	0	0.29	OP04
073	1yn1-m5_A_U696_G697	NAN	NANT	0	0.53	OP04
074	1yn1-m6_A_U696_G697	NAN	NANT	0	0.88	OP04
075	1yn1-m7_A_U696_G697	NAN	NANT	0	0.35	OP04
076	1yn1-m8_A_U696_G697	NAN	NANT	0	0.74	OP03
077	1yn1-m9_A_U696_G697	NAN	NANT	0	0.57	OP03
078	1yn1-m10_A_G697_A698	AAA	AA08	18	0.40	AA08
079	1yn1-m11_A_G697_A698	AAA	AA00	31	0.33	AA00
080	1yn1-m1_A_G697_A698	AAw	AA01	51	0.37	AA01
081	1yn1-m2_A_G697_A698	AAw	AA01	31	0.43	AA01
082	1yn1-m3_A_G697_A698	AAw	AA05	37	0.38	AA05
083	1yn1-m4_A_G697_A698	AAw	AA01	31	0.46	AA01
084	1yn1-m5_A_G697_A698	AAw	AA06	34	0.39	AA06
085	1yn1-m6_A_G697_A698	AAw	AA05	40	0.29	AA05
086	1yn1-m7_A_G697_A698	AAA	AA00	55	0.27	AA00
087	1yn1-m8_A_G697_A698	AAw	AA01	16	0.48	AA01
088	1yn1-m9_A_G697_A698	NAN	NANT	0	0.55	AA01
089	1yn1-m10_A_A698_C699	AAA	AA00	44	0.31	AA00
090	1yn1-m11_A_A698_C699	AAw	AA06	42	0.33	AA06
091	1yn1-m1_A_A698_C699	AAA	AA08	27	0.36	AA08
092	1yn1-m2_A_A698_C699	AAA	AA00	28	0.35	AA00
093	1yn1-m3_A_A698_C699	AAA	AA08	38	0.30	AA08
094	1yn1-m4_A_A698_C699	AAA	AA00	38	0.31	AA00
095	1yn1-m5_A_A698_C699	AAA	AA04	70	0.41	AA04
096	1yn1-m6_A_A698_C699	AAA	AA04	54	0.39	AA04
097	1yn1-m7_A_A698_C699	AAw	AA01	48	0.27	AA01
098	1yn1-m8_A_A698_C699	AAA	AA00	11	0.40	AA00
099	1yn1-m9_A_A698_C699	AAA	AA08	34	0.27	AA08
100	1yn1-m10_A_C699_U700	NAN	NANT	0	1.55	AA11
101	1yn1-m11_A_C699_U700	NAN	NANT	0	0.84	OP03
102	1yn1-m1_A_C699_U700	NAN	NANT	0	0.63	OP04
103	1yn1-m2_A_C699_U700	NAN	NANT	0	1.25	OP14
104	1yn1-m3_A_C699_U700	NAN	NANT	0	0.74	OP03
105	1yn1-m4_A_C699_U700	NAN	NANT	0	0.46	OP03
106	1yn1-m5_A_C699_U700	OPN	OP04	12	0.62	OP04
107	1yn1-m6_A_C699_U700	NAN	NANT	0	1.77	OP29
108	1yn1-m7_A_C699_U700	NAN	NANT	0	0.76	OP09
109	1yn1-m8_A_C699_U700	NAN	NANT	0	0.62	OP03
110	1yn1-m9_A_C699_U700	NAN	NANT	0	0.70	OP03
111	1yn1-m10_A_U700_A701	NAN	NANT	0	1.68	OP01
112	1yn1-m11_A_U700_A701	NAN	NANT	0	0.71	OP11
113	1yn1-m1_A_U700_A701	NAN	NANT	0	1.77	OP01
114	1yn1-m2_A_U700_A701	NAN	NANT	0	1.48	OP01
115	1yn1-m3_A_U700_A701	NAN	NANT	0	0.90	OP12
116	1yn1-m4_A_U700_A701	NAN	NANT	0	1.46	OP01
117	1yn1-m5_A_U700_A701	NAN	NANT	0	1.77	OP01
118	1yn1-m6_A_U700_A701	NAN	NANT	0	0.77	OP12
119	1yn1-m7_A_U700_A701	OPN	OP12	29	0.40	OP12
120	1yn1-m8_A_U700_A701	NAN	NANT	0	1.73	OP01
121	1yn1-m9_A_U700_A701	NAN	NANT	0	0.90	OP12
122	1yn1-m10_A_A701_C702	AAA	AA08	30	0.45	AA08
123	1yn1-m11_A_A701_C702	AAA	AA08	17	0.46	AA08
124	1yn1-m1_A_A701_C702	AAA	AA08	27	0.36	AA08
125	1yn1-m2_A_A701_C702	AAA	AA08	37	0.37	AA08
126	1yn1-m3_A_A701_C702	AAA	AA08	29	0.43	AA08
127	1yn1-m4_A_A701_C702	AAA	AA08	21	0.37	AA08
128	1yn1-m5_A_A701_C702	AAA	AA08	39	0.36	AA08
129	1yn1-m6_A_A701_C702	AAA	AA08	30	0.52	AA08
130	1yn1-m7_A_A701_C702	AAA	AA08	16	0.52	AA08
131	1yn1-m8_A_A701_C702	AAA	AA08	29	0.31	AA08
132	1yn1-m9_A_A701_C702	AAA	AA08	37	0.33	AA08
133	1yn1-m10_A_C702_U703	AAu	AA12	23	0.44	AA12
134	1yn1-m11_A_C702_U703	AAA	AA00	40	0.30	AA00
135	1yn1-m1_A_C702_U703	AAu	AA12	23	0.40	AA12
136	1yn1-m2_A_C702_U703	AAu	AA12	27	0.39	AA12
137	1yn1-m3_A_C702_U703	AAA	AA00	29	0.33	AA00
138	1yn1-m4_A_C702_U703	AAu	AA12	26	0.38	AA12
139	1yn1-m5_A_C702_U703	AAA	AA00	19	0.37	AA00
140	1yn1-m6_A_C702_U703	AAA	AA00	22	0.38	AA00
141	1yn1-m7_A_C702_U703	AAA	AA00	43	0.29	AA00
142	1yn1-m8_A_C702_U703	AAu	AA12	27	0.46	AA12
143	1yn1-m9_A_C702_U703	AAA	AA00	45	0.28	AA00
144	1yn1-m10_A_U703_C704	AAA	AA00	69	0.24	AA00
145	1yn1-m11_A_U703_C704	AAA	AA00	57	0.32	AA00
146	1yn1-m1_A_U703_C704	AAA	AA00	45	0.36	AA00
147	1yn1-m2_A_U703_C704	AAA	AA00	46	0.34	AA00
148	1yn1-m3_A_U703_C704	AAA	AA00	59	0.26	AA00
149	1yn1-m4_A_U703_C704	AAA	AA00	64	0.31	AA00
150	1yn1-m5_A_U703_C704	AAA	AA00	66	0.34	AA00
151	1yn1-m6_A_U703_C704	AAA	AA00	50	0.31	AA00
152	1yn1-m7_A_U703_C704	AAA	AA00	60	0.25	AA00
153	1yn1-m8_A_U703_C704	AAA	AA08	43	0.39	AA08
154	1yn1-m9_A_U703_C704	AAA	AA00	40	0.30	AA00
155	1yn1-m10_A_C704_G705	AAu	AA12	28	0.47	AA12
156	1yn1-m11_A_C704_G705	NAN	NANT	0	0.47	AA12
157	1yn1-m1_A_C704_G705	AAA	AA00	14	0.40	AA00
158	1yn1-m2_A_C704_G705	AAA	AA00	21	0.42	AA00
159	1yn1-m3_A_C704_G705	AAA	AA00	38	0.34	AA00
160	1yn1-m4_A_C704_G705	AAu	AA12	26	0.33	AA12
161	1yn1-m5_A_C704_G705	AAu	AA12	17	0.30	AA12
162	1yn1-m6_A_C704_G705	AAu	AA12	27	0.36	AA12
163	1yn1-m7_A_C704_G705	NAN	NANT	0	0.52	AB04
164	1yn1-m8_A_C704_G705	AAu	AA12	22	0.41	AA12
165	1yn1-m9_A_C704_G705	AAA	AA03	34	0.44	AA03
166	1yn1-m10_A_G705_C706	AAA	AA00	9	0.42	AA00
167	1yn1-m11_A_G705_C706	AAA	AA00	36	0.35	AA00
168	1yn1-m1_A_G705_C706	AAA	AA00	24	0.29	AA00
169	1yn1-m2_A_G705_C706	AAA	AA00	30	0.37	AA00
170	1yn1-m3_A_G705_C706	AAA	AA00	17	0.46	AA00
171	1yn1-m4_A_G705_C706	AAA	AA00	8	0.46	AA00
172	1yn1-m5_A_G705_C706	AAA	AA00	26	0.39	AA00
173	1yn1-m6_A_G705_C706	AAA	AA00	26	0.39	AA00
174	1yn1-m7_A_G705_C706	AAA	AA00	31	0.29	AA00
175	1yn1-m8_A_G705_C706	AAA	AA00	26	0.41	AA00
176	1yn1-m9_A_G705_C706	AAA	AA00	32	0.40	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 176 detected steps in 11 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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