DNATCO v4.1: results

Crystal structure of selenium-modified Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene

Results of the assignment of 82 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1yls_A_G101_G102	AAA	AA00	43	0.20	AA00
02	1yls_A_G102_A103	NAN	NANT	0	0.96	AA07
03	1yls_A_A103_G104	AAA	AA00	93	0.17	AA00
04	1yls_A_G104_C105	AAA	AA00	81	0.26	AA00
05	1yls_A_C105_UMS106	AAA	AA00	69	0.18	AA00
06	1yls_A_UMS106_C107	AAA	AA08	84	0.19	AA08
07	1yls_A_C107_G108	NAN	NANT	0	0.27	AA06
08	1yls_A_G108_C109	NAN	NANT	0	0.40	AA03
09	1yls_B_G201_G202	AAA	AA04	64	0.28	AA04
10	1yls_B_G202_G203	AAA	AA00	43	0.23	AA00
11	1yls_B_G205_A206	AAA	AA00	68	0.20	AA00
12	1yls_B_A206_G207	AAA	AA08	65	0.19	AA08
13	1yls_B_G207_G208	NAN	NANT	0	0.57	OP02
14	1yls_B_C210_G211	AAA	AA00	88	0.19	AA00
15	1yls_B_G211_U212	AAA	AA08	71	0.25	AA08
16	1yls_B_U212_G213	A-B	AB05	45	0.42	AB05
17	1yls_B_G213_C214	OPN	OP10	64	0.26	OP10
18	1yls_B_C214_C215	AAA	AA00	61	0.21	AA00
19	1yls_B_C215_G216	AAA	AA00	30	0.39	AA00
20	1yls_B_G216_G217	AAA	AA00	79	0.21	AA00
21	1yls_B_G217_C218	AAA	AA08	88	0.17	AA08
22	1yls_B_C218_UMS219	AAA	AA08	70	0.27	AA08
23	1yls_B_UMS219_C220	AAA	AA04	36	0.21	AA04
24	1yls_B_C220_U221	AAA	AA08	55	0.29	AA08
25	1yls_B_U221_UMS222	NAN	NANT	0	0.38	OP09
26	1yls_B_UMS222_C223	NAN	NANT	0	1.54	IC04
27	1yls_B_C223_G224	NAN	NANT	0	0.61	ZZ1S
28	1yls_B_G224_G225	NAN	NANT	0	0.93	AAS1
29	1yls_B_G225_A226	AAA	AA04	78	0.31	AA04
30	1yls_B_A226_G227	AAA	AA08	77	0.14	AA08
31	1yls_B_G227_C228	NAN	NANT	0	0.39	AA04
32	1yls_B_C228_A229	AAA	AA00	82	0.15	AA00
33	1yls_B_A229_A230	AAA	AA08	71	0.26	AA08
34	1yls_B_A230_U231	AAA	AA04	69	0.19	AA04
35	1yls_B_U231_A232	NAN	NANT	0	0.72	IC02
36	1yls_B_A232_C233	NAN	NANT	0	0.89	OP14
37	1yls_B_C233_U234	NAN	NANT	0	0.43	BB16
38	1yls_B_U234_C235	NAN	NANT	0	0.28	OP12
39	1yls_B_C235_G236	AAA	AA03	70	0.23	AA03
40	1yls_B_G236_G237	AAA	AA04	87	0.28	AA04
41	1yls_B_G237_C238	AAA	AA03	84	0.31	AA03
42	1yls_C_G101_G102	AAA	AA00	33	0.32	AA00
43	1yls_C_G102_A103	NAN	NANT	0	0.95	AA07
44	1yls_C_A103_G104	AAA	AA04	84	0.18	AA04
45	1yls_C_G104_C105	AAA	AA04	87	0.26	AA04
46	1yls_C_C105_UMS106	AAA	AA08	50	0.26	AA08
47	1yls_C_UMS106_C107	AAA	AA08	52	0.29	AA08
48	1yls_C_C107_G108	AAw	AA06	27	0.35	AA06
49	1yls_C_G108_C109	AAA	AA08	63	0.25	AA08
50	1yls_D_G201_G202	AAA	AA00	57	0.27	AA00
51	1yls_D_G202_G203	AAA	AA00	63	0.18	AA00
52	1yls_D_G205_A206	AAA	AA08	75	0.28	AA08
53	1yls_D_A206_G207	AAA	AA08	74	0.21	AA08
54	1yls_D_G207_G208	NAN	NANT	0	0.51	OP02
55	1yls_D_C210_G211	AAA	AA00	83	0.21	AA00
56	1yls_D_G211_U212	AAA	AA00	90	0.14	AA00
57	1yls_D_U212_G213	A-B	AB05	39	0.39	AB05
58	1yls_D_G213_C214	NAN	NANT	0	0.35	OP10
59	1yls_D_C214_C215	AAA	AA00	72	0.19	AA00
60	1yls_D_C215_G216	AAA	AA00	36	0.39	AA00
61	1yls_D_G216_G217	NAN	NANT	0	0.46	AA04
62	1yls_D_G217_C218	AAA	AA08	81	0.18	AA08
63	1yls_D_C218_UMS219	AAA	AA08	72	0.23	AA08
64	1yls_D_UMS219_C220	AAw	AA10	45	0.42	AA10
65	1yls_D_C220_U221	AAA	AA08	78	0.24	AA08
66	1yls_D_U221_UMS222	NAN	NANT	0	0.42	OP09
67	1yls_D_UMS222_C223	OPN	OP20	83	0.31	OP20
68	1yls_D_C223_G224	NAN	NANT	0	0.41	ZZ1S
69	1yls_D_G224_G225	NAN	NANT	0	0.76	AAS1
70	1yls_D_G225_A226	NAN	NANT	0	0.78	AA05
71	1yls_D_A226_G227	NAN	NANT	0	0.40	AA03
72	1yls_D_G227_C228	AAA	AA08	50	0.27	AA08
73	1yls_D_C228_A229	AAA	AA00	68	0.20	AA00
74	1yls_D_A229_A230	AAA	AA00	57	0.25	AA00
75	1yls_D_A230_U231	AAA	AA00	65	0.27	AA00
76	1yls_D_U231_A232	NAN	NANT	0	0.71	IC02
77	1yls_D_A232_C233	NAN	NANT	0	0.80	OP04
78	1yls_D_C233_U234	NAN	NANT	0	0.42	BB16
79	1yls_D_U234_C235	OPN	OP12	63	0.30	OP12
80	1yls_D_C235_G236	AAA	AA04	82	0.26	AA04
81	1yls_D_G236_G237	AAA	AA08	79	0.15	AA08
82	1yls_D_G237_C238	AAA	AA00	69	0.30	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 82 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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