DNATCO v4.1: results

Crystal structure of the Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene

Results of the assignment of 94 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1ykv_A_G101_G102	AAA	AA03	27	0.39	AA03
02	1ykv_A_G102_A103	NAN	NANT	0	1.00	AA07
03	1ykv_A_A103_G104	AAA	AA00	76	0.21	AA00
04	1ykv_A_G104_C105	AAA	AA00	56	0.36	AA00
05	1ykv_A_C105_U106	AAA	AA00	66	0.26	AA00
06	1ykv_A_U106_C107	AAA	AA00	61	0.21	AA00
07	1ykv_A_C107_G108	AAw	AA06	66	0.17	AA06
08	1ykv_A_G108_C109	AAA	AA08	66	0.24	AA08
09	1ykv_A_C109_C110	AAA	AA08	80	0.14	AA08
10	1ykv_A_C110_C111	AAA	AA00	60	0.20	AA00
11	1ykv_B_G201_G202	AAA	AA00	54	0.24	AA00
12	1ykv_B_G202_G203	AAA	AA00	73	0.18	AA00
13	1ykv_B_G203_C204	AAw	AA11	77	0.24	AA11
14	1ykv_B_C204_G205	NAN	NANT	0	0.65	AA04
15	1ykv_B_G205_A206	AAA	AA04	87	0.14	AA04
16	1ykv_B_A206_G207	AAA	AA03	47	0.26	AA03
17	1ykv_B_G207_G208	NAN	NANT	0	0.49	OP02
18	1ykv_B_G208_C209	AAA	AA08	49	0.25	AA08
19	1ykv_B_C209_C210	AAA	AA08	76	0.20	AA08
20	1ykv_B_C210_G211	AAA	AA08	70	0.21	AA08
21	1ykv_B_G211_U212	AAA	AA08	88	0.19	AA08
22	1ykv_B_U212_G213	A-B	AB05	74	0.40	AB05
23	1ykv_B_G213_C214	OPN	OP10	27	0.35	OP10
24	1ykv_B_C214_C215	AAA	AA08	68	0.23	AA08
25	1ykv_B_C215_A216	AAA	AA08	69	0.26	AA08
26	1ykv_B_A216_G217	AAA	AA08	57	0.40	AA08
27	1ykv_B_G217_C218	AAA	AA08	83	0.18	AA08
28	1ykv_B_C218_U219	AAA	AA00	84	0.18	AA00
29	1ykv_B_U219_C220	AAw	AA06	40	0.30	AA06
30	1ykv_B_C220_U221	AAA	AA08	82	0.36	AA08
31	1ykv_B_U221_U222	NAN	NANT	0	0.32	OP09
32	1ykv_B_U222_C223	NAN	NANT	0	1.59	IC04
33	1ykv_B_C223_G224	NAN	NANT	0	0.53	ZZ1S
34	1ykv_B_G224_G225	NAN	NANT	0	0.87	AAS1
35	1ykv_B_G225_A226	AAA	AA04	82	0.21	AA04
36	1ykv_B_A226_G227	AAA	AA08	21	0.27	AA08
37	1ykv_B_G227_C228	AAA	AA00	14	0.36	AA00
38	1ykv_B_C228_A229	NAN	NANT	0	0.58	AA08
39	1ykv_B_A229_A230	AAA	AA08	56	0.31	AA08
40	1ykv_B_A230_U231	AAA	AA00	31	0.30	AA00
41	1ykv_B_U231_A232	NAN	NANT	0	0.75	IC02
42	1ykv_B_A232_C233	NAN	NANT	0	0.86	OP04
43	1ykv_B_C233_U234	NAN	NANT	0	0.44	BB16
44	1ykv_B_U234_C235	NAN	NANT	0	0.41	OP12
45	1ykv_B_C235_G236	AAu	AA12	23	0.44	AA12
46	1ykv_B_G236_G237	AAA	AA04	69	0.29	AA04
47	1ykv_B_G237_C238	AAA	AA03	83	0.27	AA03
48	1ykv_C_G101_G102	AAA	AA00	28	0.33	AA00
49	1ykv_C_G102_A103	NAN	NANT	0	0.93	AA07
50	1ykv_C_A103_G104	AAA	AA00	91	0.15	AA00
51	1ykv_C_G104_C105	AAA	AA00	64	0.33	AA00
52	1ykv_C_C105_U106	AAA	AA00	64	0.25	AA00
53	1ykv_C_U106_C107	NAN	NANT	0	0.41	AA10
54	1ykv_C_C107_G108	AAw	AA11	55	0.38	AA11
55	1ykv_C_G108_C109	NAN	NANT	0	0.46	AA03
56	1ykv_C_C109_C110	AAA	AA00	83	0.17	AA00
57	1ykv_C_C110_C111	AAA	AA00	47	0.24	AA00
58	1ykv_D_G201_G202	AAA	AA00	34	0.22	AA00
59	1ykv_D_G202_G203	AAA	AA00	84	0.15	AA00
60	1ykv_D_G203_C204	AAA	AA00	97	0.11	AA00
61	1ykv_D_C204_G205	AAA	AA04	70	0.28	AA04
62	1ykv_D_G205_A206	AAA	AA04	91	0.12	AA04
63	1ykv_D_A206_G207	AAA	AA03	62	0.27	AA03
64	1ykv_D_G207_G208	NAN	NANT	0	0.48	OP02
65	1ykv_D_G208_C209	AAA	AA00	31	0.33	AA00
66	1ykv_D_C209_C210	AAA	AA00	68	0.12	AA00
67	1ykv_D_C210_G211	AAA	AA08	28	0.26	AA08
68	1ykv_D_G211_U212	AAA	AA08	15	0.29	AA08
69	1ykv_D_U212_G213	A-B	AB05	47	0.35	AB05
70	1ykv_D_G213_C214	NAN	NANT	0	0.41	OP10
71	1ykv_D_C214_C215	AAA	AA08	48	0.27	AA08
72	1ykv_D_C215_A216	AAA	AA00	41	0.37	AA00
73	1ykv_D_A216_G217	AAA	AA08	17	0.44	AA08
74	1ykv_D_G217_C218	AAA	AA08	70	0.19	AA08
75	1ykv_D_C218_U219	AAA	AA00	55	0.31	AA00
76	1ykv_D_U219_C220	AAA	AA04	88	0.16	AA04
77	1ykv_D_C220_U221	AAA	AA00	81	0.25	AA00
78	1ykv_D_U221_U222	NAN	NANT	0	0.21	OP09
79	1ykv_D_U222_C223	NAN	NANT	0	0.46	OP20
80	1ykv_D_C223_G224	NAN	NANT	0	0.50	ZZ1S
81	1ykv_D_G224_G225	NAN	NANT	0	0.83	AAS1
82	1ykv_D_G225_A226	AAA	AA04	82	0.21	AA04
83	1ykv_D_A226_G227	AAA	AA04	87	0.27	AA04
84	1ykv_D_G227_C228	AAA	AA00	82	0.18	AA00
85	1ykv_D_C228_A229	AAA	AA08	12	0.41	AA08
86	1ykv_D_A229_A230	AAA	AA04	85	0.24	AA04
87	1ykv_D_A230_U231	AAA	AA00	45	0.29	AA00
88	1ykv_D_U231_A232	NAN	NANT	0	0.72	IC02
89	1ykv_D_A232_C233	NAN	NANT	0	0.99	OP14
90	1ykv_D_C233_U234	A-B	AB04	22	0.51	AB04
91	1ykv_D_U234_C235	NAN	NANT	0	0.36	OP12
92	1ykv_D_C235_G236	AAu	AA12	8	0.52	AA12
93	1ykv_D_G236_G237	AAA	AA04	68	0.26	AA04
94	1ykv_D_G237_C238	AAA	AA08	66	0.23	AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 94 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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