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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-[hydroxy(methyleneamino)oxy]ethyl] Thymidine (T*)

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011y7f_A_DG1_DC2AAAAA00680.24 AA00
021y7f_A_DC2_DG3AAwAA01930.06 AA01
031y7f_A_DG3_DT4AAAAA00230.36 AA00
041y7f_A_DT4_DA5AAwAA01890.22 AA01
051y7f_A_DA5_2NT6AAAAA00880.14 AA00
061y7f_A_2NT6_DA7AAAAA00890.12 AA00
071y7f_A_DA7_DC8AAAAA00930.14 AA00
081y7f_A_DC8_DG9AAAAA00920.15 AA00
091y7f_A_DG9_DC10AAAAA00780.23 AA00
101y7f_B_DG11_DC12AAAAA00810.15 AA00
111y7f_B_DC12_DG13AAAAA00910.19 AA00
121y7f_B_DG13_DT14AAAAA00880.18 AA00
131y7f_B_DT14_DA15AAAAA00950.13 AA00
141y7f_B_DA15_2NT16AAAAA00860.16 AA00
151y7f_B_2NT16_DA17AAAAA00830.14 AA00
161y7f_B_DA17_DC18AAAAA00900.20 AA00
171y7f_B_DC18_DG19AAAAA00700.24 AA00
181y7f_B_DG19_DC20AAAAA00750.22 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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