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Conformers: ABBIImiBZICOPNSYNN
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HIV-1 DIS RNA subtype F- Mn soaked

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011y3o_A_C1_U2AAAAA08890.18 AA08
021y3o_A_U2_5BU3AAAAA00770.22 AA00
031y3o_A_5BU3_G4AAAAA00960.14 AA00
041y3o_A_G4_C5AAAAA00880.13 AA00
051y3o_A_C5_U6AAAAA00900.19 AA00
061y3o_A_U6_G7A-BAB05850.20 AB05
071y3o_A_G7_A8OPNOP13590.44 OP13
081y3o_A_A8_A9A-BAB05500.25 AB05
091y3o_A_A9_G10NANNANT00.60 OP21
101y3o_A_G10_U11AAAAA00650.15 AA00
111y3o_A_U11_G12AAAAA00820.17 AA00
121y3o_A_G12_C13AAAAA00820.13 AA00
131y3o_A_C13_A14AAAAA00920.12 AA00
141y3o_A_A14_C15AAAAA00860.16 AA00
151y3o_A_C15_A16AAAAA00910.25 AA00
161y3o_A_A16_C17AAAAA00840.20 AA00
171y3o_A_C17_A18AAAAA00890.15 AA00
181y3o_A_A18_G19AAAAA00950.09 AA00
191y3o_A_G19_C20AAAAA00890.09 AA00
201y3o_A_C20_A21AAwAA01760.22 AA01
211y3o_A_A21_A22AAAAA08700.25 AA08
221y3o_A_A22_G23AAAAA00730.19 AA00
231y3o_B_C1_U2AAAAA08890.18 AA08
241y3o_B_U2_5BU3AAAAA00930.15 AA00
251y3o_B_5BU3_G4AAAAA00820.10 AA00
261y3o_B_G4_C5AAAAA00930.09 AA00
271y3o_B_C5_U6AAAAA00790.21 AA00
281y3o_B_U6_G7A-BAB05910.20 AB05
291y3o_B_G7_A8NANNANT00.72 OP17
301y3o_B_A8_A9A-BAB05530.39 AB05
311y3o_B_A9_G10NANNANT00.65 OP21
321y3o_B_G10_U11AAAAA00880.10 AA00
331y3o_B_U11_G12AAAAA00940.17 AA00
341y3o_B_G12_C13AAAAA00900.15 AA00
351y3o_B_C13_A14AAAAA00820.18 AA00
361y3o_B_A14_C15AAAAA00900.14 AA00
371y3o_B_C15_A16AAAAA00890.30 AA00
381y3o_B_A16_C17AAAAA00750.24 AA00
391y3o_B_C17_A18AAAAA00960.14 AA00
401y3o_B_A18_G19AAAAA00750.15 AA00
411y3o_B_G19_C20AAAAA00870.12 AA00
421y3o_B_C20_A21AAAAA00950.10 AA00
431y3o_B_A21_A22AAAAA00920.22 AA00
441y3o_B_A22_G23AAAAA00870.16 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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