Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Solution structure of E.coli RNase P RNA P4 stem, U69C/C70U mutation, complexed with cobalt (III) hexammine.

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011xsu_A_G1_G2NANNANT00.46 AA02
021xsu_A_G2_A3AAAAA00580.24 AA00
031xsu_A_A3_A4AAAAA00460.28 AA00
041xsu_A_A4_G5AAAAA00680.29 AA00
051xsu_A_G5_C6NANNANT00.45 AA04
061xsu_A_C6_U7NANNANT01.34 AA10
071xsu_A_U7_C8NANNANT00.92 OP15
081xsu_A_C8_G9AAAAA00160.41 AA00
091xsu_A_G9_G10AAAAA00450.31 AA00
101xsu_A_G10_U11AAAAA04590.34 AA04
111xsu_A_U11_C12AAAAA00550.28 AA00
121xsu_A_C12_U13AAAAA08220.45 AA08
131xsu_A_U13_U14NANNANT00.61 OP09
141xsu_A_U14_C15NANNANT01.00 OP12
151xsu_A_C15_G16NANNANT00.55 ZZ1S
161xsu_A_G16_G17NANNANT00.71 AAS1
171xsu_A_G17_A18AAAAA00370.23 AA00
181xsu_A_A18_C19AAAAA00440.30 AA00
191xsu_A_C19_C20AAAAA00310.37 AA00
201xsu_A_C20_G21AAAAA00580.24 AA00
211xsu_A_G21_G22AAAAA0090.33 AA00
221xsu_A_G22_C23AAAAA04450.23 AA04
231xsu_A_C23_U24AAAAA00390.25 AA00
241xsu_A_U24_U25AAAAA00420.25 AA00
251xsu_A_U25_C26AAAAA00650.29 AA00
261xsu_A_C26_C27AAwAA01410.44 AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N