Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap and ddTTP
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1xsn_T_DC1_DG2 | BBB | BB00 | 76 | 0.41 |
| 02 | 1xsn_T_DG2_DG3 | BB2 | BB07 | 72 | 0.23 |
| 03 | 1xsn_T_DG3_DC4 | B-A | BA05 | 57 | 0.10 |
| 04 | 1xsn_T_DC4_DA5 | NAN | NANT | 0 | 1.19 |
| 05 | 1xsn_T_DA5_DA6 | BBB | BB00 | 71 | 0.24 |
| 06 | 1xsn_T_DA6_DT7 | B-A | BA08 | 54 | 0.41 |
| 07 | 1xsn_T_DT7_DA8 | A-B | AB01 | 40 | 0.33 |
| 08 | 1xsn_T_DA8_DC9 | BBw | BB03 | 70 | 0.32 |
| 09 | 1xsn_T_DC9_DT10 | BBB | BB00 | 53 | 0.32 |
| 10 | 1xsn_T_DT10_DG11 | BBB | BB00 | 68 | 0.38 |
| 11 | 1xsn_P_DC1_DA2 | A-B | AB01 | 55 | 0.25 |
| 12 | 1xsn_P_DA2_DG3 | BBB | BB01 | 83 | 0.18 |
| 13 | 1xsn_P_DG3_DT4 | B-A | BA05 | 83 | 0.17 |
| 14 | 1xsn_P_DT4_DA5 | B-A | BA05 | 66 | 0.30 |
| 15 | 1xsn_D_DG1_DC2 | A-B | AB04 | 75 | 0.22 |
| 16 | 1xsn_D_DC2_DC3 | BBB | BB00 | 89 | 0.17 |
| 17 | 1xsn_D_DC3_DG4 | BB2 | BB07 | 57 | 0.29 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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