Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Solution structure of E.coli RNase P RNA P4 stem oligoribonucleotide, U69C/C70U mutation
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1xsh_A_G1_G2 | NAN | NANT | 0 | 0.50 |
| 02 | 1xsh_A_G2_A3 | AAA | AA00 | 54 | 0.22 |
| 03 | 1xsh_A_A3_A4 | AAA | AA00 | 32 | 0.32 |
| 04 | 1xsh_A_A4_G5 | AAA | AA00 | 78 | 0.24 |
| 05 | 1xsh_A_G5_C6 | AAA | AA00 | 40 | 0.44 |
| 06 | 1xsh_A_C6_U7 | NAN | NANT | 0 | 1.36 |
| 07 | 1xsh_A_U7_C8 | NAN | NANT | 0 | 0.66 |
| 08 | 1xsh_A_C8_G9 | NAN | NANT | 0 | 0.64 |
| 09 | 1xsh_A_G9_G10 | AAA | AA04 | 71 | 0.24 |
| 10 | 1xsh_A_G10_U11 | AAA | AA04 | 37 | 0.47 |
| 11 | 1xsh_A_U11_C12 | AAA | AA00 | 37 | 0.36 |
| 12 | 1xsh_A_C12_U13 | AAA | AA04 | 30 | 0.68 |
| 13 | 1xsh_A_U13_U14 | NAN | NANT | 0 | 2.11 |
| 14 | 1xsh_A_U14_C15 | NAN | NANT | 0 | 1.51 |
| 15 | 1xsh_A_C15_G16 | NAN | NANT | 0 | 1.86 |
| 16 | 1xsh_A_G16_G17 | NAN | NANT | 0 | 0.73 |
| 17 | 1xsh_A_G17_A18 | AAA | AA02 | 60 | 0.33 |
| 18 | 1xsh_A_A18_C19 | AAA | AA00 | 9 | 0.47 |
| 19 | 1xsh_A_C19_C20 | AAA | AA08 | 25 | 0.38 |
| 20 | 1xsh_A_C20_G21 | AAA | AA00 | 20 | 0.35 |
| 21 | 1xsh_A_G21_G22 | AAA | AA00 | 20 | 0.25 |
| 22 | 1xsh_A_G22_C23 | AAA | AA04 | 50 | 0.24 |
| 23 | 1xsh_A_C23_U24 | AAA | AA08 | 44 | 0.24 |
| 24 | 1xsh_A_U24_U25 | AAA | AA00 | 30 | 0.29 |
| 25 | 1xsh_A_U25_C26 | AAA | AA00 | 60 | 0.27 |
| 26 | 1xsh_A_C26_C27 | NAN | NANT | 0 | 0.69 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|