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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the BlaI repressor in complex with DNA

Results of the assignment of 15 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011xsd_B_DT201_DA202BBBBB00810.18 BB00
021xsd_B_DA202_DC203BBwBB02850.18 BB02
031xsd_B_DC203_DT204BBBBB00570.23 BB00
041xsd_B_DT204_DA205BBBBB00460.20 BB00
051xsd_B_DA205_DC206NANNANT00.40 BB02
061xsd_B_DC206_DA207BB2BB07590.28 BB07
071xsd_B_DA207_DT208BBBBB00860.19 BB00
081xsd_B_DT208_DA209BBBBB00730.24 BB00
091xsd_B_DA209_DT210BBBBB00710.25 BB00
101xsd_B_DT210_DG211NANNANT00.30 BB10
111xsd_B_DG211_DT212BBwBB02640.25 BB02
121xsd_B_DT212_DA213BBBBB00780.27 BB00
131xsd_B_DA213_DG214B12BB04570.23 BB04
141xsd_B_DG214_DT215BBBBB00360.43 BB00
151xsd_B_DT215_DA216BBBBB00750.19 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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