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Conformers: ABBIImiBZICOPNSYNN
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A MODEL OF THE TERNARY COMPLEX FORMED BETWEEN MARA, THE ALPHA-CTD OF RNA POLYMERASE AND DNA

Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011xs9_B_DG404_DA405AAAAA00580.24 AA00
021xs9_B_DA405_DT406AAAAA08610.31 AA08
031xs9_B_DT406_DT407AAAAA04750.23 AA04
041xs9_B_DT407_DT408AAAAA04740.30 AA04
051xs9_B_DT408_DA409NANNANT00.56 AA12
061xs9_B_DA409_DG410AAAAA08420.38 AA08
071xs9_B_DG410_DC411AAAAA00750.22 AA00
081xs9_B_DC411_DA412AAAAA04610.30 AA04
091xs9_B_DA412_DA413AAAAA08560.32 AA08
101xs9_B_DA413_DA414AAAAA00830.17 AA00
111xs9_B_DA414_DA415AAAAA08110.49 AA08
121xs9_B_DA415_DC416AAAAA08470.44 AA08
131xs9_B_DC416_DG417NANNANT00.67 AA04
141xs9_B_DG417_DT418AAAAA04620.31 AA04
151xs9_B_DT418_DG419AAAAA03780.25 AA03
161xs9_B_DG419_DG420AAAAA04490.39 AA04
171xs9_B_DG420_DC421AAAAA00830.19 AA00
181xs9_B_DC421_DA422AAAAA00910.16 AA00
191xs9_B_DA422_DT423AAAAA04630.33 AA04
201xs9_C_DA428_DT429AAAAA04810.21 AA04
211xs9_C_DT429_DG430AAAAA04780.28 AA04
221xs9_C_DG430_DC431AAAAA04700.31 AA04
231xs9_C_DC431_DC432AAAAA00660.24 AA00
241xs9_C_DC432_DA433AAAAA00650.28 AA00
251xs9_C_DA433_DC434AAAAA00580.26 AA00
261xs9_C_DC434_DG435AAAAA04630.30 AA04
271xs9_C_DG435_DT436AAAAA00650.20 AA00
281xs9_C_DT436_DT437AAAAA04800.24 AA04
291xs9_C_DT437_DT438AAAAA04440.39 AA04
301xs9_C_DT438_DT439AAAAA00630.28 AA00
311xs9_C_DT439_DG440AAAAA03710.23 AA03
321xs9_C_DG440_DC441AAAAA00740.20 AA00
331xs9_C_DC441_DT442AAAAA00420.37 AA00
341xs9_C_DT442_DA443AAAAA04610.41 AA04
351xs9_C_DA443_DA444AAAAA08740.31 AA08
361xs9_C_DA444_DA445AAAAA08790.30 AA08
371xs9_C_DA445_DT446AAAAA04820.18 AA04
381xs9_C_DT446_DC447AAAAA00390.19 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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