Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
crystal structure of alfalfa mosaic virus RNA 3'UTR in complex with coat protein N terminal peptide
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 33 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1xok_A_A843_U844 | NAN | NANT | 0 | 0.68 |
| 02 | 1xok_A_U844_G845 | OPN | OP21 | 43 | 0.38 |
| 03 | 1xok_A_G845_C846 | NAN | NANT | 0 | 1.27 |
| 04 | 1xok_A_C846_U847 | AAA | AA00 | 77 | 0.34 |
| 05 | 1xok_A_U847_C848 | AAA | AA00 | 74 | 0.27 |
| 06 | 1xok_A_C848_A849 | AAw | AA06 | 14 | 0.28 |
| 07 | 1xok_A_A849_U850 | NAN | NANT | 0 | 0.29 |
| 08 | 1xok_A_U850_G851 | AAw | AA06 | 30 | 0.28 |
| 09 | 1xok_A_G851_C852 | NAN | NANT | 0 | 1.19 |
| 10 | 1xok_A_A856_C857 | NAN | NANT | 0 | 1.22 |
| 11 | 1xok_A_C857_U858 | NAN | NANT | 0 | 0.97 |
| 12 | 1xok_A_U858_G859 | AAw | AA01 | 8 | 0.31 |
| 13 | 1xok_A_G859_C860 | AAA | AA08 | 22 | 0.36 |
| 14 | 1xok_A_C860_A861 | AAA | AA08 | 48 | 0.26 |
| 15 | 1xok_A_A861_U862 | AAA | AA08 | 41 | 0.23 |
| 16 | 1xok_A_U862_G863 | NAN | NANT | 0 | 0.45 |
| 17 | 1xok_A_G863_A864 | AAA | AA00 | 63 | 0.19 |
| 18 | 1xok_A_A864_A865 | ICL | IC01 | 63 | 0.23 |
| 19 | 1xok_A_A865_U866 | NAN | NANT | 0 | 0.84 |
| 20 | 1xok_A_U866_G867 | NAN | NANT | 0 | 0.44 |
| 21 | 1xok_A_G867_C868 | NAN | NANT | 0 | 0.55 |
| 22 | 1xok_A_C868_C869 | AAA | AA08 | 87 | 0.32 |
| 23 | 1xok_A_C869_C870 | AAA | AA04 | 93 | 0.20 |
| 24 | 1xok_A_C870_C871 | AAA | AA08 | 62 | 0.21 |
| 25 | 1xok_A_C871_U872 | NAN | NANT | 0 | 0.34 |
| 26 | 1xok_B_A873_A874 | AAu | AA12 | 35 | 0.19 |
| 27 | 1xok_B_A874_G875 | AAA | AA04 | 92 | 0.22 |
| 28 | 1xok_B_G875_G876 | AAA | AA08 | 77 | 0.26 |
| 29 | 1xok_B_G876_G877 | AAA | AA00 | 73 | 0.20 |
| 30 | 1xok_B_G877_A878 | NAN | NANT | 0 | 0.66 |
| 31 | 1xok_B_A878_U879 | NAN | NANT | 0 | 1.80 |
| 32 | 1xok_B_U879_G880 | NAN | NANT | 0 | 1.83 |
| 33 | 1xok_B_G880_C881 | NAN | NANT | 0 | 0.96 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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