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Conformers: ABBIImiBZICOPNSYNN
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High resolution structure of the holliday junction intermediate in cre-loxp site-specific recombination

Results of the assignment of 66 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011xo0_C_DA2_DT3BBBBB00530.41 BB00
021xo0_C_DT3_DA4BB2BB07760.26 BB07
031xo0_C_DA4_DA5BBBBB00830.31 BB00
041xo0_C_DA5_DC6NANNANT00.63 BB02
051xo0_C_DC6_DT7BBwBB16720.52 BB16
061xo0_C_DT7_DT8BBBBB00960.10 BB00
071xo0_C_DT8_DC9miBBB15820.22 BB15
081xo0_C_DC9_DG10B12BB04280.26 BB04
091xo0_C_DG10_DT11B12BB04890.19 BB04
101xo0_C_DT11_DA12BBBBB00930.17 BB00
111xo0_C_DA12_DT13BBBBB00950.21 BB00
121xo0_C_DT13_DA14B12BB04780.23 BB04
131xo0_C_DA14_DA15BBBBB00780.20 BB00
141xo0_C_DA15_DT16miBBB15720.21 BB15
151xo0_C_DT16_DG17B12BB04580.17 BB04
161xo0_C_DG17_DT18BBwBB02790.14 BB02
171xo0_C_DT18_DA19NANNANT01.94 OP19
181xo0_C_DA19_DT20BBwBB02240.41 BB02
191xo0_C_DT20_DG21BBBBB00750.24 BB00
201xo0_C_DG21_DC22B12BB04750.18 BB04
211xo0_C_DC22_DT23BBBBB00940.17 BB00
221xo0_C_DT23_DA24B12BB04800.16 BB04
231xo0_C_DA24_DT25BBBBB00400.33 BB00
241xo0_C_DT25_DA26NANNANT00.47 BB02
251xo0_C_DA26_DC27BBBBB00460.34 BB00
261xo0_C_DC27_DG28BB2BB07810.23 BB07
271xo0_C_DG28_DA29BBBBB00910.17 BB00
281xo0_C_DA29_DA30B12BB04770.18 BB04
291xo0_C_DA30_DG31BBBBB00870.15 BB00
301xo0_C_DG31_DT32BBBBB00870.24 BB00
311xo0_C_DT32_DT33B12BB04200.36 BB04
321xo0_C_DT33_DA34B12BB04790.26 BB04
331xo0_C_DA34_DT35BBwBB11790.20 BB11
341xo0_D_DA2_DT3BBBBB00760.28 BB00
351xo0_D_DT3_DA4B12BB04670.25 BB04
361xo0_D_DA4_DA5BBBBB00750.34 BB00
371xo0_D_DA5_DC6NANNANT00.59 BB02
381xo0_D_DC6_DT7BBBBB00530.36 BB00
391xo0_D_DT7_DT8BBBBB00950.09 BB00
401xo0_D_DT8_DC9miBBB15900.22 BB15
411xo0_D_DC9_DG10BBBBB00940.16 BB00
421xo0_D_DG10_DT11BBBBB00900.14 BB00
431xo0_D_DT11_DA12B12BB04500.18 BB04
441xo0_D_DA12_DT13BBBBB00820.24 BB00
451xo0_D_DT13_DA14B12BB04670.26 BB04
461xo0_D_DA14_DG15BBBBB00800.16 BB00
471xo0_D_DG15_DC16NANNANT00.47 BB02
481xo0_D_DC16_DA17miBBB15250.52 BB15
491xo0_D_DA17_DT18NANNANT00.85 BB08
501xo0_D_DT18_DA19NANNANT00.67 IC06
511xo0_D_DA19_DC20miBBB15850.23 BB15
521xo0_D_DC20_DA21BBBBB00800.18 BB00
531xo0_D_DA21_DT22NANNANT00.57 BB02
541xo0_D_DT22_DT23BBBBB00710.29 BB00
551xo0_D_DT23_DA24B12BB04590.29 BB04
561xo0_D_DA24_DT25B12BB04430.34 BB04
571xo0_D_DT25_DA26BBBBB00210.51 BB00
581xo0_D_DA26_DC27BBBBB00850.22 BB00
591xo0_D_DC27_DG28BB2BB07660.22 BB07
601xo0_D_DG28_DA29BBBBB00980.00 BB00
611xo0_D_DA29_DA30B12BB04830.20 BB04
621xo0_D_DA30_DG31BBBBB00710.28 BB00
631xo0_D_DG31_DT32BBBBB00600.32 BB00
641xo0_D_DT32_DT33BBBBB00740.24 BB00
651xo0_D_DT33_DA34BB2BB08340.41 BB08
661xo0_D_DA34_DT35miBBB12200.41 BB12

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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