DNATCO v4.1: results

The Structure of a Rigorously Conserved RNA Element Within the SARS Virus Genome

Results of the assignment of 46 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1xjr_A_GTP1_G2	AAA	AA00	39	0.34	AA00
02	1xjr_A_G2_A3	AAA	AA00	85	0.20	AA00
03	1xjr_A_A3_G4	AAA	AA00	75	0.20	AA00
04	1xjr_A_G4_U5	AAA	AA00	81	0.19	AA00
05	1xjr_A_U5_U6	AAA	AA00	94	0.11	AA00
06	1xjr_A_U6_C7	AAA	AA08	84	0.18	AA08
07	1xjr_A_C7_A8	AAA	AA00	89	0.14	AA00
08	1xjr_A_A8_C9	AAA	AA08	81	0.20	AA08
09	1xjr_A_C9_C10	AAA	AA00	69	0.29	AA00
10	1xjr_A_C10_G11	NAN	NANT	0	1.28	OP04
11	1xjr_A_G11_A12	AAA	AA04	89	0.18	AA04
12	1xjr_A_A12_G13	NAN	NANT	0	0.86	AA12
13	1xjr_A_G13_G14	AAA	AA00	26	0.40	AA00
14	1xjr_A_G14_C15	AAA	AA00	76	0.27	AA00
15	1xjr_A_C15_C16	AAA	AA04	92	0.19	AA04
16	1xjr_A_C16_A17	AAA	AA00	93	0.15	AA00
17	1xjr_A_A17_C18	AAA	AA00	69	0.20	AA00
18	1xjr_A_C18_G19	A-B	AB05	63	0.26	AB05
19	1xjr_A_G19_C20	NAN	NANT	0	1.26	BA17
20	1xjr_A_C20_G21	AAA	AA08	70	0.28	AA08
21	1xjr_A_G21_G22	AAA	AA04	26	0.53	AA04
22	1xjr_A_G22_A23	OPN	OP03	27	0.27	OP03
23	1xjr_A_A23_G24	AAA	AA00	25	0.37	AA00
24	1xjr_A_G24_U25	NAN	NANT	0	0.72	OP25
25	1xjr_A_U25_A26	NAN	NANT	0	0.63	OP11
26	1xjr_A_A26_C27	AAA	AA00	22	0.36	AA00
27	1xjr_A_C27_G28	A-B	AB05	72	0.23	AB05
28	1xjr_A_G28_A29	NAN	NANT	0	1.02	OP10
29	1xjr_A_A29_U30	NAN	NANT	0	2.06	OP03
30	1xjr_A_U30_C31	OPN	OP11	45	0.29	OP11
31	1xjr_A_C31_G32	AAA	AA00	69	0.27	AA00
32	1xjr_A_G32_A33	NAN	NANT	0	0.57	OP30
33	1xjr_A_A33_G34	NAN	NANT	0	0.72	OP27
34	1xjr_A_G34_G35	AAA	AA00	51	0.33	AA00
35	1xjr_A_G35_G36	AAA	AA04	92	0.23	AA04
36	1xjr_A_G36_U37	AAA	AA00	77	0.26	AA00
37	1xjr_A_U37_A38	A-B	AB05	57	0.51	AB05
38	1xjr_A_A38_C39	NAN	NANT	0	0.43	OP26
39	1xjr_A_C39_A40	AAA	AA08	76	0.29	AA08
40	1xjr_A_A40_G41	AAA	AA00	38	0.41	AA00
41	1xjr_A_G41_U42	AAA	AA00	89	0.14	AA00
42	1xjr_A_U42_G43	AAA	AA00	87	0.10	AA00
43	1xjr_A_G43_A44	AAA	AA08	91	0.17	AA08
44	1xjr_A_A44_A45	AAA	AA04	93	0.09	AA04
45	1xjr_A_A45_U46	AAA	AA08	91	0.18	AA08
46	1xjr_A_U46_U47	AAA	AA04	79	0.30	AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 46 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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