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Conformers: ABBIImiBZICOPNSYNN
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Solution Structure of the Extended U6 ISL as Observed in the U2/U6 complex from Saccharomyces cerevisiae

Results of the assignment of 310 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011xhp-m10_A_G1_A2AAAAA00690.40 AA00
0021xhp-m1_A_G1_A2AAAAA00730.40 AA00
0031xhp-m2_A_G1_A2AAAAA00680.39 AA00
0041xhp-m3_A_G1_A2AAAAA00700.41 AA00
0051xhp-m4_A_G1_A2AAAAA00700.39 AA00
0061xhp-m5_A_G1_A2AAAAA00710.40 AA00
0071xhp-m6_A_G1_A2AAAAA00750.41 AA00
0081xhp-m7_A_G1_A2AAAAA00790.41 AA00
0091xhp-m8_A_G1_A2AAAAA00700.39 AA00
0101xhp-m9_A_G1_A2AAAAA00700.40 AA00
0111xhp-m10_A_A2_G3AAAAA00460.40 AA00
0121xhp-m1_A_A2_G3AAAAA00490.39 AA00
0131xhp-m2_A_A2_G3AAAAA00470.40 AA00
0141xhp-m3_A_A2_G3AAAAA00470.41 AA00
0151xhp-m4_A_A2_G3AAAAA00470.40 AA00
0161xhp-m5_A_A2_G3AAAAA00480.40 AA00
0171xhp-m6_A_A2_G3AAAAA00490.40 AA00
0181xhp-m7_A_A2_G3AAAAA00540.39 AA00
0191xhp-m8_A_A2_G3AAAAA00480.40 AA00
0201xhp-m9_A_A2_G3AAAAA00480.40 AA00
0211xhp-m10_A_G3_C4AAAAA00920.30 AA00
0221xhp-m1_A_G3_C4AAAAA00910.29 AA00
0231xhp-m2_A_G3_C4AAAAA00910.31 AA00
0241xhp-m3_A_G3_C4AAAAA00920.31 AA00
0251xhp-m4_A_G3_C4AAAAA00910.31 AA00
0261xhp-m5_A_G3_C4AAAAA00920.29 AA00
0271xhp-m6_A_G3_C4AAAAA00900.30 AA00
0281xhp-m7_A_G3_C4AAAAA00910.29 AA00
0291xhp-m8_A_G3_C4AAAAA00920.30 AA00
0301xhp-m9_A_G3_C4AAAAA00920.31 AA00
0311xhp-m10_A_C4_A5AAAAA00820.29 AA00
0321xhp-m1_A_C4_A5AAAAA00830.29 AA00
0331xhp-m2_A_C4_A5AAAAA00840.30 AA00
0341xhp-m3_A_C4_A5AAAAA00830.32 AA00
0351xhp-m4_A_C4_A5AAAAA00830.30 AA00
0361xhp-m5_A_C4_A5AAAAA00830.28 AA00
0371xhp-m6_A_C4_A5AAAAA00820.30 AA00
0381xhp-m7_A_C4_A5AAAAA00840.29 AA00
0391xhp-m8_A_C4_A5AAAAA00840.30 AA00
0401xhp-m9_A_C4_A5AAAAA00850.30 AA00
0411xhp-m10_A_A5_G6AAAAA00420.39 AA00
0421xhp-m1_A_A5_G6AAAAA00360.40 AA00
0431xhp-m2_A_A5_G6AAAAA00430.39 AA00
0441xhp-m3_A_A5_G6AAAAA00480.38 AA00
0451xhp-m4_A_A5_G6AAAAA00340.41 AA00
0461xhp-m5_A_A5_G6AAAAA00280.41 AA00
0471xhp-m6_A_A5_G6AAAAA00360.40 AA00
0481xhp-m7_A_A5_G6AAAAA00340.40 AA00
0491xhp-m8_A_A5_G6AAAAA00370.40 AA00
0501xhp-m9_A_A5_G6AAAAA00460.39 AA00
0511xhp-m10_A_G6_U7AAAAA00860.17 AA00
0521xhp-m1_A_G6_U7AAAAA00870.17 AA00
0531xhp-m2_A_G6_U7AAAAA00870.18 AA00
0541xhp-m3_A_G6_U7AAAAA00890.19 AA00
0551xhp-m4_A_G6_U7AAAAA00850.17 AA00
0561xhp-m5_A_G6_U7AAAAA00820.17 AA00
0571xhp-m6_A_G6_U7AAAAA00850.17 AA00
0581xhp-m7_A_G6_U7AAAAA00880.18 AA00
0591xhp-m8_A_G6_U7AAAAA00880.17 AA00
0601xhp-m9_A_G6_U7AAAAA00890.18 AA00
0611xhp-m10_A_U7_U8AAAAA00930.20 AA00
0621xhp-m1_A_U7_U8AAAAA00950.19 AA00
0631xhp-m2_A_U7_U8AAAAA00950.19 AA00
0641xhp-m3_A_U7_U8AAAAA00950.20 AA00
0651xhp-m4_A_U7_U8AAAAA00940.20 AA00
0661xhp-m5_A_U7_U8AAAAA00940.20 AA00
0671xhp-m6_A_U7_U8AAAAA00940.18 AA00
0681xhp-m7_A_U7_U8AAAAA00950.19 AA00
0691xhp-m8_A_U7_U8AAAAA00960.18 AA00
0701xhp-m9_A_U7_U8AAAAA00970.19 AA00
0711xhp-m10_A_U8_C9AAAAA00980.27 AA00
0721xhp-m1_A_U8_C9AAAAA00970.27 AA00
0731xhp-m2_A_U8_C9AAAAA00970.27 AA00
0741xhp-m3_A_U8_C9AAAAA00970.29 AA00
0751xhp-m4_A_U8_C9AAAAA00970.26 AA00
0761xhp-m5_A_U8_C9AAAAA00970.28 AA00
0771xhp-m6_A_U8_C9AAAAA00980.25 AA00
0781xhp-m7_A_U8_C9AAAAA00970.26 AA00
0791xhp-m8_A_U8_C9AAAAA00970.26 AA00
0801xhp-m9_A_U8_C9AAAAA00960.29 AA00
0811xhp-m10_A_C9_C10AAAAA00380.38 AA00
0821xhp-m1_A_C9_C10AAAAA00270.40 AA00
0831xhp-m2_A_C9_C10AAAAA00280.42 AA00
0841xhp-m3_A_C9_C10AAAAA00410.40 AA00
0851xhp-m4_A_C9_C10AAAAA00250.43 AA00
0861xhp-m5_A_C9_C10AAAAA00340.37 AA00
0871xhp-m6_A_C9_C10AAAAA00280.41 AA00
0881xhp-m7_A_C9_C10AAAAA00330.40 AA00
0891xhp-m8_A_C9_C10AAAAA00260.41 AA00
0901xhp-m9_A_C9_C10AAAAA00320.39 AA00
0911xhp-m10_A_C10_C11AAAAA00970.15 AA00
0921xhp-m1_A_C10_C11AAAAA00970.14 AA00
0931xhp-m2_A_C10_C11AAAAA00970.14 AA00
0941xhp-m3_A_C10_C11AAAAA00970.16 AA00
0951xhp-m4_A_C10_C11AAAAA00950.15 AA00
0961xhp-m5_A_C10_C11AAAAA00970.15 AA00
0971xhp-m6_A_C10_C11AAAAA00960.14 AA00
0981xhp-m7_A_C10_C11AAAAA00960.15 AA00
0991xhp-m8_A_C10_C11AAAAA00960.14 AA00
1001xhp-m9_A_C10_C11AAAAA00950.15 AA00
1011xhp-m10_A_C11_C12AAAAA00970.20 AA00
1021xhp-m1_A_C11_C12AAAAA00970.20 AA00
1031xhp-m2_A_C11_C12AAAAA00970.19 AA00
1041xhp-m3_A_C11_C12AAAAA00970.20 AA00
1051xhp-m4_A_C11_C12AAAAA00980.17 AA00
1061xhp-m5_A_C11_C12AAAAA00980.18 AA00
1071xhp-m6_A_C11_C12AAAAA00970.15 AA00
1081xhp-m7_A_C11_C12AAAAA00980.17 AA00
1091xhp-m8_A_C11_C12AAAAA00980.15 AA00
1101xhp-m9_A_C11_C12AAAAA00970.18 AA00
1111xhp-m10_A_C12_U13AAAAA00840.38 AA00
1121xhp-m1_A_C12_U13AAAAA00860.35 AA00
1131xhp-m2_A_C12_U13AAAAA00880.33 AA00
1141xhp-m3_A_C12_U13AAAAA00870.35 AA00
1151xhp-m4_A_C12_U13AAAAA00960.22 AA00
1161xhp-m5_A_C12_U13AAAAA00840.35 AA00
1171xhp-m6_A_C12_U13AAAAA00990.14 AA00
1181xhp-m7_A_C12_U13AAAAA00970.21 AA00
1191xhp-m8_A_C12_U13AAAAA00980.16 AA00
1201xhp-m9_A_C12_U13AAAAA00870.33 AA00
1211xhp-m10_A_U13_G14AAwAA01270.47 AA01
1221xhp-m1_A_U13_G14AAAAA08390.44 AA08
1231xhp-m2_A_U13_G14AAAAA08420.43 AA08
1241xhp-m3_A_U13_G14AAAAA00110.53 AA00
1251xhp-m4_A_U13_G14AAAAA00180.42 AA00
1261xhp-m5_A_U13_G14AAAAA00120.50 AA00
1271xhp-m6_A_U13_G14AAAAA00180.40 AA00
1281xhp-m7_A_U13_G14AAAAA00250.41 AA00
1291xhp-m8_A_U13_G14NANNANT00.39 AA00
1301xhp-m9_A_U13_G14AAAAA08470.38 AA08
1311xhp-m10_A_G14_C15NANNANT00.94 OP09
1321xhp-m1_A_G14_C15NANNANT00.37 OP04
1331xhp-m2_A_G14_C15NANNANT00.32 OP04
1341xhp-m3_A_G14_C15NANNANT00.93 OP09
1351xhp-m4_A_G14_C15NANNANT01.00 OP09
1361xhp-m5_A_G14_C15NANNANT00.34 OP04
1371xhp-m6_A_G14_C15NANNANT00.96 OP09
1381xhp-m7_A_G14_C15NANNANT00.99 OP09
1391xhp-m8_A_G14_C15NANNANT01.01 OP09
1401xhp-m9_A_G14_C15NANNANT00.93 OP09
1411xhp-m10_A_C15_A16BBBBB01800.31 BB01
1421xhp-m1_A_C15_A16NANNANT00.42 BB00
1431xhp-m2_A_C15_A16NANNANT00.53 BB00
1441xhp-m3_A_C15_A16NANNANT00.48 BB00
1451xhp-m4_A_C15_A16NANNANT00.43 BA08
1461xhp-m5_A_C15_A16NANNANT00.66 BB00
1471xhp-m6_A_C15_A16B-ABA05310.23 BA05
1481xhp-m7_A_C15_A16NANNANT00.42 BA08
1491xhp-m8_A_C15_A16NANNANT00.27 BA01
1501xhp-m9_A_C15_A16NANNANT00.45 BA08
1511xhp-m10_A_A16_U17NANNANT01.61 AB04
1521xhp-m1_A_A16_U17NANNANT01.27 BB00
1531xhp-m2_A_A16_U17NANNANT01.29 BB00
1541xhp-m3_A_A16_U17NANNANT01.55 AB04
1551xhp-m4_A_A16_U17NANNANT00.99 AA12
1561xhp-m5_A_A16_U17NANNANT01.15 BB00
1571xhp-m6_A_A16_U17NANNANT01.19 AA12
1581xhp-m7_A_A16_U17NANNANT00.99 AA12
1591xhp-m8_A_A16_U17NANNANT01.03 AA12
1601xhp-m9_A_A16_U17NANNANT00.99 AA12
1611xhp-m10_A_U17_A18NANNANT00.94 OP12
1621xhp-m1_A_U17_A18NANNANT01.06 OP12
1631xhp-m2_A_U17_A18NANNANT01.06 OP12
1641xhp-m3_A_U17_A18NANNANT00.97 OP12
1651xhp-m4_A_U17_A18NANNANT01.03 OP12
1661xhp-m5_A_U17_A18NANNANT01.04 OP12
1671xhp-m6_A_U17_A18NANNANT01.06 OP12
1681xhp-m7_A_U17_A18NANNANT01.04 OP12
1691xhp-m8_A_U17_A18NANNANT01.07 OP12
1701xhp-m9_A_U17_A18NANNANT00.92 AA05
1711xhp-m10_A_A18_A19AAAAA00370.45 AA00
1721xhp-m1_A_A18_A19AAAAA00190.45 AA00
1731xhp-m2_A_A18_A19AAAAA00140.46 AA00
1741xhp-m3_A_A18_A19AAAAA00160.45 AA00
1751xhp-m4_A_A18_A19AAAAA00160.46 AA00
1761xhp-m5_A_A18_A19AAAAA00150.44 AA00
1771xhp-m6_A_A18_A19AAAAA00140.49 AA00
1781xhp-m7_A_A18_A19AAAAA00180.45 AA00
1791xhp-m8_A_A18_A19AAAAA00130.50 AA00
1801xhp-m9_A_A18_A19AAAAA00120.52 AA00
1811xhp-m10_A_A19_G20AAAAA00930.27 AA00
1821xhp-m1_A_A19_G20AAAAA00890.28 AA00
1831xhp-m2_A_A19_G20AAAAA00900.26 AA00
1841xhp-m3_A_A19_G20AAAAA00890.28 AA00
1851xhp-m4_A_A19_G20AAAAA00930.24 AA00
1861xhp-m5_A_A19_G20AAAAA00930.24 AA00
1871xhp-m6_A_A19_G20AAAAA00920.24 AA00
1881xhp-m7_A_A19_G20AAAAA00920.24 AA00
1891xhp-m8_A_A19_G20AAAAA00920.24 AA00
1901xhp-m9_A_A19_G20AAAAA00940.25 AA00
1911xhp-m10_A_G20_G21AAAAA00930.29 AA00
1921xhp-m1_A_G20_G21AAAAA00930.30 AA00
1931xhp-m2_A_G20_G21AAAAA00950.27 AA00
1941xhp-m3_A_G20_G21AAAAA00930.28 AA00
1951xhp-m4_A_G20_G21AAAAA00960.24 AA00
1961xhp-m5_A_G20_G21AAAAA00950.25 AA00
1971xhp-m6_A_G20_G21AAAAA00940.26 AA00
1981xhp-m7_A_G20_G21AAAAA00960.24 AA00
1991xhp-m8_A_G20_G21AAAAA00960.24 AA00
2001xhp-m9_A_G20_G21AAAAA00940.27 AA00
2011xhp-m10_A_G21_A22AAAAA00900.38 AA00
2021xhp-m1_A_G21_A22AAAAA00920.38 AA00
2031xhp-m2_A_G21_A22AAAAA00900.37 AA00
2041xhp-m3_A_G21_A22AAAAA00910.36 AA00
2051xhp-m4_A_G21_A22AAAAA00870.36 AA00
2061xhp-m5_A_G21_A22AAAAA00880.37 AA00
2071xhp-m6_A_G21_A22AAAAA00880.37 AA00
2081xhp-m7_A_G21_A22AAAAA00850.37 AA00
2091xhp-m8_A_G21_A22AAAAA00890.36 AA00
2101xhp-m9_A_G21_A22AAAAA00890.38 AA00
2111xhp-m10_A_A22_U23AAAAA00570.40 AA00
2121xhp-m1_A_A22_U23AAAAA00570.40 AA00
2131xhp-m2_A_A22_U23AAAAA00570.40 AA00
2141xhp-m3_A_A22_U23AAAAA00580.39 AA00
2151xhp-m4_A_A22_U23AAAAA00550.38 AA00
2161xhp-m5_A_A22_U23AAAAA00580.38 AA00
2171xhp-m6_A_A22_U23AAAAA00600.40 AA00
2181xhp-m7_A_A22_U23AAAAA00570.38 AA00
2191xhp-m8_A_A22_U23AAAAA00580.39 AA00
2201xhp-m9_A_A22_U23AAAAA00560.39 AA00
2211xhp-m10_A_U23_G24AAAAA00740.30 AA00
2221xhp-m1_A_U23_G24AAAAA00730.29 AA00
2231xhp-m2_A_U23_G24AAAAA00790.28 AA00
2241xhp-m3_A_U23_G24AAAAA00710.30 AA00
2251xhp-m4_A_U23_G24AAAAA00760.29 AA00
2261xhp-m5_A_U23_G24AAAAA00630.32 AA00
2271xhp-m6_A_U23_G24AAAAA00740.28 AA00
2281xhp-m7_A_U23_G24AAAAA00600.34 AA00
2291xhp-m8_A_U23_G24AAAAA00770.26 AA00
2301xhp-m9_A_U23_G24AAAAA00630.34 AA00
2311xhp-m10_A_G24_A25AAAAA00380.42 AA00
2321xhp-m1_A_G24_A25AAAAA00360.42 AA00
2331xhp-m2_A_G24_A25AAAAA00400.42 AA00
2341xhp-m3_A_G24_A25AAAAA00440.42 AA00
2351xhp-m4_A_G24_A25AAAAA00350.43 AA00
2361xhp-m5_A_G24_A25AAAAA00400.41 AA00
2371xhp-m6_A_G24_A25AAAAA00340.43 AA00
2381xhp-m7_A_G24_A25AAAAA00430.42 AA00
2391xhp-m8_A_G24_A25AAAAA00300.44 AA00
2401xhp-m9_A_G24_A25AAAAA00510.40 AA00
2411xhp-m10_A_A25_A26AAAAA00900.31 AA00
2421xhp-m1_A_A25_A26AAAAA00900.32 AA00
2431xhp-m2_A_A25_A26AAAAA00910.32 AA00
2441xhp-m3_A_A25_A26AAAAA00900.33 AA00
2451xhp-m4_A_A25_A26AAAAA00890.32 AA00
2461xhp-m5_A_A25_A26AAAAA00900.31 AA00
2471xhp-m6_A_A25_A26AAAAA00900.32 AA00
2481xhp-m7_A_A25_A26AAAAA00900.33 AA00
2491xhp-m8_A_A25_A26AAAAA00900.32 AA00
2501xhp-m9_A_A25_A26AAAAA00910.32 AA00
2511xhp-m10_A_A26_C27AAAAA00650.28 AA00
2521xhp-m1_A_A26_C27AAAAA00650.28 AA00
2531xhp-m2_A_A26_C27AAAAA00700.28 AA00
2541xhp-m3_A_A26_C27AAAAA00690.28 AA00
2551xhp-m4_A_A26_C27AAAAA00690.29 AA00
2561xhp-m5_A_A26_C27AAAAA00680.29 AA00
2571xhp-m6_A_A26_C27AAAAA00670.29 AA00
2581xhp-m7_A_A26_C27AAAAA00690.28 AA00
2591xhp-m8_A_A26_C27AAAAA00660.29 AA00
2601xhp-m9_A_A26_C27AAAAA00690.28 AA00
2611xhp-m10_A_C27_C28AAAAA00790.22 AA00
2621xhp-m1_A_C27_C28AAAAA00800.22 AA00
2631xhp-m2_A_C27_C28AAAAA00790.23 AA00
2641xhp-m3_A_C27_C28AAAAA00800.24 AA00
2651xhp-m4_A_C27_C28AAAAA00790.23 AA00
2661xhp-m5_A_C27_C28AAAAA00800.22 AA00
2671xhp-m6_A_C27_C28AAAAA00800.22 AA00
2681xhp-m7_A_C27_C28AAAAA00810.22 AA00
2691xhp-m8_A_C27_C28AAAAA00800.22 AA00
2701xhp-m9_A_C27_C28AAAAA00790.23 AA00
2711xhp-m10_A_C28_G29AAAAA00820.25 AA00
2721xhp-m1_A_C28_G29AAAAA00830.23 AA00
2731xhp-m2_A_C28_G29AAAAA00810.25 AA00
2741xhp-m3_A_C28_G29AAAAA00820.25 AA00
2751xhp-m4_A_C28_G29AAAAA00830.23 AA00
2761xhp-m5_A_C28_G29AAAAA00820.23 AA00
2771xhp-m6_A_C28_G29AAAAA00830.23 AA00
2781xhp-m7_A_C28_G29AAAAA00830.24 AA00
2791xhp-m8_A_C28_G29AAAAA00830.23 AA00
2801xhp-m9_A_C28_G29AAAAA00820.24 AA00
2811xhp-m10_A_G29_U30AAAAA00600.39 AA00
2821xhp-m1_A_G29_U30AAAAA00540.39 AA00
2831xhp-m2_A_G29_U30AAAAA00560.40 AA00
2841xhp-m3_A_G29_U30AAAAA00540.41 AA00
2851xhp-m4_A_G29_U30AAAAA00580.39 AA00
2861xhp-m5_A_G29_U30AAAAA00540.40 AA00
2871xhp-m6_A_G29_U30AAAAA00570.38 AA00
2881xhp-m7_A_G29_U30AAAAA00510.41 AA00
2891xhp-m8_A_G29_U30AAAAA00510.41 AA00
2901xhp-m9_A_G29_U30AAAAA00590.39 AA00
2911xhp-m10_A_U30_U31AAAAA00930.24 AA00
2921xhp-m1_A_U30_U31AAAAA00980.22 AA00
2931xhp-m2_A_U30_U31AAAAA00950.25 AA00
2941xhp-m3_A_U30_U31AAAAA00940.26 AA00
2951xhp-m4_A_U30_U31AAAAA00960.24 AA00
2961xhp-m5_A_U30_U31AAAAA00970.23 AA00
2971xhp-m6_A_U30_U31AAAAA00970.22 AA00
2981xhp-m7_A_U30_U31AAAAA00980.23 AA00
2991xhp-m8_A_U30_U31AAAAA00950.24 AA00
3001xhp-m9_A_U30_U31AAAAA00950.23 AA00
3011xhp-m10_A_U31_C32AAAAA00940.27 AA00
3021xhp-m1_A_U31_C32AAAAA00900.28 AA00
3031xhp-m2_A_U31_C32AAAAA00920.29 AA00
3041xhp-m3_A_U31_C32AAAAA00940.29 AA00
3051xhp-m4_A_U31_C32AAAAA00920.29 AA00
3061xhp-m5_A_U31_C32AAAAA00910.28 AA00
3071xhp-m6_A_U31_C32AAAAA00910.27 AA00
3081xhp-m7_A_U31_C32AAAAA00880.28 AA00
3091xhp-m8_A_U31_C32AAAAA00920.29 AA00
3101xhp-m9_A_U31_C32AAAAA00930.28 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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