Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of Human DNA Ligase I bound to 5'-adenylated, nicked DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1x9n_B_DG3_DC4 | NAN | NANT | 0 | 0.40 |
| 02 | 1x9n_B_DC4_DT5 | BBB | BB00 | 13 | 0.41 |
| 03 | 1x9n_B_DT5_DG6 | BBB | BB00 | 47 | 0.30 |
| 04 | 1x9n_B_DG6_DA7 | NAN | NANT | 0 | 0.45 |
| 05 | 1x9n_B_DA7_DT8 | NAN | NANT | 0 | 0.60 |
| 06 | 1x9n_B_DT8_DG9 | NAN | NANT | 0 | 0.55 |
| 07 | 1x9n_B_DG9_DC10 | NAN | NANT | 0 | 0.57 |
| 08 | 1x9n_B_DC10_DG11 | B12 | BB04 | 88 | 0.19 |
| 09 | 1x9n_B_DG11_DT12 | NAN | NANT | 0 | 0.44 |
| 10 | 1x9n_C_DG1_DT2 | NAN | NANT | 0 | 0.34 |
| 11 | 1x9n_C_DT2_DC3 | NAN | NANT | 0 | 0.34 |
| 12 | 1x9n_C_DC3_DG4 | NAN | NANT | 0 | 0.48 |
| 13 | 1x9n_C_DG4_DG5 | miB | BB15 | 62 | 0.35 |
| 14 | 1x9n_C_DG5_DA6 | BBB | BB00 | 24 | 0.38 |
| 15 | 1x9n_C_DA6_DC7 | BBB | BB00 | 73 | 0.24 |
| 16 | 1x9n_C_DC7_DT8 | NAN | NANT | 0 | 0.48 |
| 17 | 1x9n_C_DT8_DG9 | NAN | NANT | 0 | 0.63 |
| 18 | 1x9n_D_DC7_DA8 | BBw | BB17 | 33 | 0.35 |
| 19 | 1x9n_D_DA8_DG9 | NAN | NANT | 0 | 0.34 |
| 20 | 1x9n_D_DG9_DT10 | BBw | BB02 | 10 | 0.40 |
| 21 | 1x9n_D_DT10_DC11 | NAN | NANT | 0 | 0.47 |
| 22 | 1x9n_D_DC11_DC12 | BBB | BB01 | 76 | 0.27 |
| 23 | 1x9n_D_DC12_DG13 | BBB | BB00 | 54 | 0.19 |
| 24 | 1x9n_D_DG13_DA14 | B-A | BA16 | 42 | 0.36 |
| 25 | 1x9n_D_DA14_DC15 | AAA | AA00 | 69 | 0.30 |
| 26 | 1x9n_D_DC15_DG16 | AAu | AA12 | 31 | 0.40 |
| 27 | 1x9n_D_DG16_DA17 | NAN | NANT | 0 | 0.33 |
| 28 | 1x9n_D_DA17_DC18 | BBw | BB02 | 18 | 0.31 |
| 29 | 1x9n_D_DC18_DG19 | BBB | BB00 | 43 | 0.47 |
| 30 | 1x9n_D_DG19_DC20 | BBB | BB01 | 8 | 0.55 |
| 31 | 1x9n_D_DC20_DA21 | BBB | BB00 | 54 | 0.21 |
| 32 | 1x9n_D_DA21_DT22 | BBB | BB00 | 31 | 0.22 |
| 33 | 1x9n_D_DT22_DC23 | B12 | BB04 | 27 | 0.31 |
| 34 | 1x9n_D_DC23_DA24 | B12 | BB04 | 49 | 0.24 |
| 35 | 1x9n_D_DA24_DG25 | BBB | BB00 | 64 | 0.26 |
| 36 | 1x9n_D_DG25_DC26 | NAN | NANT | 0 | 0.36 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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