Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
T7 DNA polymerase in complex with an N-2-acetylaminofluorene-adducted DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 19 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1x9m_C_DG13_DT14 | BBB | BB00 | 79 | 0.26 |
| 02 | 1x9m_C_DT14_DA15 | BBB | BB00 | 93 | 0.21 |
| 03 | 1x9m_C_DA15_DG16 | BBB | BB00 | 95 | 0.12 |
| 04 | 1x9m_C_DG16_DT17 | BBw | BB02 | 95 | 0.11 |
| 05 | 1x9m_C_DT17_DG18 | BBw | BB02 | 64 | 0.27 |
| 06 | 1x9m_C_DG18_DT19 | BBB | BB00 | 88 | 0.21 |
| 07 | 1x9m_C_DT19_DG20 | NAN | NANT | 0 | 0.53 |
| 08 | 1x9m_C_DG20_DA21 | NAN | NANT | 0 | 0.39 |
| 09 | 1x9m_D_8FG4_DA5 | NAN | NANT | 0 | 1.56 |
| 10 | 1x9m_D_DA5_DT6 | BBB | BB01 | 15 | 0.34 |
| 11 | 1x9m_D_DT6_DC7 | A-B | AB03 | 46 | 0.43 |
| 12 | 1x9m_D_DC7_DA8 | BBB | BB00 | 34 | 0.47 |
| 13 | 1x9m_D_DA8_DC9 | BBB | BB00 | 83 | 0.23 |
| 14 | 1x9m_D_DC9_DA10 | B12 | BB04 | 81 | 0.17 |
| 15 | 1x9m_D_DA10_DC11 | B12 | BB04 | 18 | 0.48 |
| 16 | 1x9m_D_DC11_DT12 | BBB | BB00 | 64 | 0.33 |
| 17 | 1x9m_D_DT12_DA13 | BBB | BB00 | 92 | 0.20 |
| 18 | 1x9m_D_DA13_DC14 | BBB | BB00 | 81 | 0.20 |
| 19 | 1x9m_D_DC14_DC15 | BBB | BB00 | 75 | 0.30 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|