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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
NMR structure determined for MLV NC complex with RNA sequence AACAGU

Results of the assignment of 100 detected steps in 20 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011wwd-m10_B_A493_A494NANNANT01.16 OP04
0021wwd-m11_B_A493_A494NANNANT01.14 OP04
0031wwd-m12_B_A493_A494NANNANT01.52 AB04
0041wwd-m13_B_A493_A494NANNANT01.13 ZZ01
0051wwd-m14_B_A493_A494NANNANT01.56 OP09
0061wwd-m15_B_A493_A494NANNANT01.11 OP04
0071wwd-m16_B_A493_A494NANNANT01.35 OP04
0081wwd-m17_B_A493_A494NANNANT01.31 OP04
0091wwd-m18_B_A493_A494NANNANT01.00 ZZ01
0101wwd-m19_B_A493_A494NANNANT01.17 OP04
0111wwd-m1_B_A493_A494NANNANT01.57 OP09
0121wwd-m20_B_A493_A494NANNANT01.21 OP04
0131wwd-m2_B_A493_A494NANNANT01.26 OP04
0141wwd-m3_B_A493_A494NANNANT01.13 ZZ01
0151wwd-m4_B_A493_A494NANNANT01.52 AB04
0161wwd-m5_B_A493_A494NANNANT01.11 OP04
0171wwd-m6_B_A493_A494NANNANT01.11 OP04
0181wwd-m7_B_A493_A494NANNANT01.18 OP04
0191wwd-m8_B_A493_A494NANNANT01.61 OP09
0201wwd-m9_B_A493_A494NANNANT01.36 OP25
0211wwd-m10_B_A494_C495NANNANT01.06 OP01
0221wwd-m11_B_A494_C495NANNANT00.81 AA13
0231wwd-m12_B_A494_C495NANNANT00.90 AA13
0241wwd-m13_B_A494_C495NANNANT00.88 AA13
0251wwd-m14_B_A494_C495NANNANT01.51 AB02
0261wwd-m15_B_A494_C495NANNANT01.07 OP01
0271wwd-m16_B_A494_C495NANNANT01.07 OP01
0281wwd-m17_B_A494_C495NANNANT01.51 OP24
0291wwd-m18_B_A494_C495NANNANT00.82 AA13
0301wwd-m19_B_A494_C495NANNANT01.98 OP25
0311wwd-m1_B_A494_C495NANNANT01.05 OP01
0321wwd-m20_B_A494_C495NANNANT02.21 OP25
0331wwd-m2_B_A494_C495NANNANT01.05 OP01
0341wwd-m3_B_A494_C495NANNANT00.88 AA13
0351wwd-m4_B_A494_C495NANNANT00.90 AA13
0361wwd-m5_B_A494_C495NANNANT01.06 OP01
0371wwd-m6_B_A494_C495NANNANT01.07 OP01
0381wwd-m7_B_A494_C495NANNANT01.49 OP24
0391wwd-m8_B_A494_C495NANNANT01.06 OP01
0401wwd-m9_B_A494_C495NANNANT00.90 AA13
0411wwd-m10_B_C495_A496NANNANT01.28 OP01
0421wwd-m11_B_C495_A496NANNANT01.56 OP26
0431wwd-m12_B_C495_A496NANNANT01.82 OP30
0441wwd-m13_B_C495_A496NANNANT01.80 OP30
0451wwd-m14_B_C495_A496NANNANT01.90 OP29
0461wwd-m15_B_C495_A496NANNANT01.42 OP04
0471wwd-m16_B_C495_A496NANNANT01.80 OP30
0481wwd-m17_B_C495_A496NANNANT00.92 OP09
0491wwd-m18_B_C495_A496NANNANT01.56 OP26
0501wwd-m19_B_C495_A496NANNANT00.96 OP09
0511wwd-m1_B_C495_A496NANNANT01.60 OP26
0521wwd-m20_B_C495_A496NANNANT01.83 OP30
0531wwd-m2_B_C495_A496NANNANT01.60 OP26
0541wwd-m3_B_C495_A496NANNANT01.80 OP30
0551wwd-m4_B_C495_A496NANNANT01.82 OP30
0561wwd-m5_B_C495_A496NANNANT01.09 OP09
0571wwd-m6_B_C495_A496NANNANT01.42 OP04
0581wwd-m7_B_C495_A496NANNANT01.58 OP18
0591wwd-m8_B_C495_A496NANNANT01.61 OP26
0601wwd-m9_B_C495_A496NANNANT01.24 OP01
0611wwd-m10_B_A496_G497NANNANT00.76 AA07
0621wwd-m11_B_A496_G497AAuAA07250.57 AA07
0631wwd-m12_B_A496_G497NANNANT00.67 AA07
0641wwd-m13_B_A496_G497NANNANT00.67 AA07
0651wwd-m14_B_A496_G497AAuAA07290.65 AA07
0661wwd-m15_B_A496_G497AAuAA07150.70 AA07
0671wwd-m16_B_A496_G497NANNANT00.71 AB04
0681wwd-m17_B_A496_G497AAuAA07180.66 AA07
0691wwd-m18_B_A496_G497NANNANT00.68 AA07
0701wwd-m19_B_A496_G497AAuAA07160.73 AA07
0711wwd-m1_B_A496_G497AAuAA07350.57 AA07
0721wwd-m20_B_A496_G497NANNANT00.61 AA07
0731wwd-m2_B_A496_G497NANNANT00.61 AA07
0741wwd-m3_B_A496_G497NANNANT00.67 AA07
0751wwd-m4_B_A496_G497NANNANT00.67 AA07
0761wwd-m5_B_A496_G497AAuAA07100.70 AA07
0771wwd-m6_B_A496_G497AAuAA07150.70 AA07
0781wwd-m7_B_A496_G497AAuAA07380.57 AA07
0791wwd-m8_B_A496_G497AAuAA07240.59 AA07
0801wwd-m9_B_A496_G497NANNANT00.66 AA07
0811wwd-m10_B_G497_U498NANNANT00.84 AA07
0821wwd-m11_B_G497_U498NANNANT00.80 AA13
0831wwd-m12_B_G497_U498NANNANT00.93 OP03
0841wwd-m13_B_G497_U498NANNANT00.68 OP05
0851wwd-m14_B_G497_U498NANNANT00.67 AA07
0861wwd-m15_B_G497_U498NANNANT01.01 OP02
0871wwd-m16_B_G497_U498NANNANT01.23 OP03
0881wwd-m17_B_G497_U498AAuAA07280.59 AA07
0891wwd-m18_B_G497_U498NANNANT01.30 OP25
0901wwd-m19_B_G497_U498NANNANT01.30 OP05
0911wwd-m1_B_G497_U498NANNANT01.12 OP03
0921wwd-m20_B_G497_U498NANNANT01.27 IC07
0931wwd-m2_B_G497_U498NANNANT01.06 OP02
0941wwd-m3_B_G497_U498NANNANT00.68 OP05
0951wwd-m4_B_G497_U498NANNANT00.93 OP03
0961wwd-m5_B_G497_U498NANNANT00.98 OP05
0971wwd-m6_B_G497_U498NANNANT01.01 OP02
0981wwd-m7_B_G497_U498NANNANT00.76 OP03
0991wwd-m8_B_G497_U498NANNANT01.63 OP06
1001wwd-m9_B_G497_U498NANNANT00.52 OP07

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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