Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
X-ray structure of the A-decamer GCGTATACGC with a single 2'-o-butyl thymine in place of T6, Mg-form
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1wv5_A_DG1_DC2 | AAA | AA00 | 34 | 0.32 |
| 02 | 1wv5_A_DC2_DG3 | AAA | AA00 | 76 | 0.12 |
| 03 | 1wv5_A_DG3_DT4 | AAA | AA00 | 60 | 0.18 |
| 04 | 1wv5_A_DT4_DA5 | AAA | AA04 | 88 | 0.19 |
| 05 | 1wv5_A_DA5_2BT6 | AAA | AA00 | 51 | 0.11 |
| 06 | 1wv5_A_2BT6_DA7 | AAA | AA00 | 88 | 0.17 |
| 07 | 1wv5_A_DA7_DC8 | AAA | AA00 | 77 | 0.23 |
| 08 | 1wv5_A_DC8_DG9 | AAA | AA00 | 70 | 0.26 |
| 09 | 1wv5_A_DG9_DC10 | A-B | AB01 | 35 | 0.36 |
| 10 | 1wv5_B_DG11_DC12 | AAA | AA08 | 80 | 0.24 |
| 11 | 1wv5_B_DC12_DG13 | AAA | AA00 | 88 | 0.18 |
| 12 | 1wv5_B_DG13_DT14 | AAA | AA00 | 84 | 0.14 |
| 13 | 1wv5_B_DT14_DA15 | AAA | AA00 | 73 | 0.23 |
| 14 | 1wv5_B_DA15_2BT16 | AAA | AA00 | 73 | 0.18 |
| 15 | 1wv5_B_2BT16_DA17 | AAA | AA04 | 84 | 0.19 |
| 16 | 1wv5_B_DA17_DC18 | AAA | AA08 | 83 | 0.14 |
| 17 | 1wv5_B_DC18_DG19 | AAA | AA00 | 75 | 0.18 |
| 18 | 1wv5_B_DG19_DC20 | AAA | AA04 | 40 | 0.27 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|