Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
HELIX 45 (16S RRNA) FROM B. STEAROTHERMOPHILUS, NMR, 11 STRUCTURES

Results of the assignment of 143 detected steps in 11 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011wtt-m10_A_G1_G2AAAAA00680.29 AA00
0021wtt-m11_A_G1_G2AAAAA00700.28 AA00
0031wtt-m1_A_G1_G2AAAAA00680.30 AA00
0041wtt-m2_A_G1_G2AAAAA00620.31 AA00
0051wtt-m3_A_G1_G2AAAAA00670.28 AA00
0061wtt-m4_A_G1_G2AAAAA00660.30 AA00
0071wtt-m5_A_G1_G2AAAAA00670.30 AA00
0081wtt-m6_A_G1_G2AAAAA00650.28 AA00
0091wtt-m7_A_G1_G2AAAAA00690.29 AA00
0101wtt-m8_A_G1_G2AAAAA00330.32 AA00
0111wtt-m9_A_G1_G2AAAAA00700.28 AA00
0121wtt-m10_A_G2_A3AAAAA00220.32 AA00
0131wtt-m11_A_G2_A3AAAAA00200.32 AA00
0141wtt-m1_A_G2_A3NANNANT00.41 AA04
0151wtt-m2_A_G2_A3AAAAA00300.27 AA00
0161wtt-m3_A_G2_A3AAAAA00240.31 AA00
0171wtt-m4_A_G2_A3AAAAA00120.32 AA00
0181wtt-m5_A_G2_A3AAAAA00110.33 AA00
0191wtt-m6_A_G2_A3AAAAA00240.30 AA00
0201wtt-m7_A_G2_A3AAAAA00210.32 AA00
0211wtt-m8_A_G2_A3AAAAA00110.29 AA00
0221wtt-m9_A_G2_A3AAAAA00200.32 AA00
0231wtt-m10_A_A3_C4AAAAA00320.28 AA00
0241wtt-m11_A_A3_C4AAAAA00300.28 AA00
0251wtt-m1_A_A3_C4AAAAA00170.27 AA00
0261wtt-m2_A_A3_C4AAAAA00370.24 AA00
0271wtt-m3_A_A3_C4AAAAA00360.27 AA00
0281wtt-m4_A_A3_C4AAAAA00210.25 AA00
0291wtt-m5_A_A3_C4AAAAA00190.24 AA00
0301wtt-m6_A_A3_C4AAAAA00350.27 AA00
0311wtt-m7_A_A3_C4AAAAA00310.28 AA00
0321wtt-m8_A_A3_C4AAAAA00200.30 AA00
0331wtt-m9_A_A3_C4AAAAA00290.28 AA00
0341wtt-m10_A_C4_C5AAAAA00590.31 AA00
0351wtt-m11_A_C4_C5AAAAA08620.31 AA08
0361wtt-m1_A_C4_C5AAAAA08610.29 AA08
0371wtt-m2_A_C4_C5AAAAA00560.31 AA00
0381wtt-m3_A_C4_C5AAAAA00650.22 AA00
0391wtt-m4_A_C4_C5AAAAA00550.23 AA00
0401wtt-m5_A_C4_C5AAAAA00550.25 AA00
0411wtt-m6_A_C4_C5AAAAA00630.23 AA00
0421wtt-m7_A_C4_C5AAAAA00550.33 AA00
0431wtt-m8_A_C4_C5AAAAA08540.28 AA08
0441wtt-m9_A_C4_C5AAAAA00540.32 AA00
0451wtt-m10_A_C5_2MG6AAAAA00550.27 AA00
0461wtt-m11_A_C5_2MG6AAAAA00760.23 AA00
0471wtt-m1_A_C5_2MG6AAAAA00520.27 AA00
0481wtt-m2_A_C5_2MG6AAAAA00720.24 AA00
0491wtt-m3_A_C5_2MG6AAAAA00660.19 AA00
0501wtt-m4_A_C5_2MG6AAAAA00560.18 AA00
0511wtt-m5_A_C5_2MG6AAAAA00620.19 AA00
0521wtt-m6_A_C5_2MG6AAAAA00650.21 AA00
0531wtt-m7_A_C5_2MG6AAAAA00570.29 AA00
0541wtt-m8_A_C5_2MG6AAAAA00430.28 AA00
0551wtt-m9_A_C5_2MG6AAAAA00610.27 AA00
0561wtt-m10_A_2MG6_G7NANNANT01.68 OP08
0571wtt-m11_A_2MG6_G7NANNANT00.98 AA10
0581wtt-m1_A_2MG6_G7NANNANT01.64 OP08
0591wtt-m2_A_2MG6_G7NANNANT01.65 OP08
0601wtt-m3_A_2MG6_G7NANNANT01.02 AA10
0611wtt-m4_A_2MG6_G7NANNANT01.05 AA10
0621wtt-m5_A_2MG6_G7NANNANT01.06 AA10
0631wtt-m6_A_2MG6_G7NANNANT01.61 OP08
0641wtt-m7_A_2MG6_G7NANNANT01.69 OP08
0651wtt-m8_A_2MG6_G7NANNANT01.41 OP08
0661wtt-m9_A_2MG6_G7NANNANT01.68 OP08
0671wtt-m10_A_G7_MA68NANNANT01.63 OP23
0681wtt-m11_A_G7_MA68NANNANT00.96 OP08
0691wtt-m1_A_G7_MA68NANNANT01.13 IC04
0701wtt-m2_A_G7_MA68NANNANT00.59 AB04
0711wtt-m3_A_G7_MA68NANNANT00.99 OP08
0721wtt-m4_A_G7_MA68NANNANT01.18 OP23
0731wtt-m5_A_G7_MA68NANNANT01.20 OP23
0741wtt-m6_A_G7_MA68NANNANT01.38 OP23
0751wtt-m7_A_G7_MA68NANNANT01.10 BB02
0761wtt-m8_A_G7_MA68NANNANT01.08 OP23
0771wtt-m9_A_G7_MA68NANNANT01.10 BB02
0781wtt-m10_A_MA68_MA69NANNANT00.97 BB00
0791wtt-m11_A_MA68_MA69NANNANT00.90 BB00
0801wtt-m1_A_MA68_MA69NANNANT01.05 BB17
0811wtt-m2_A_MA68_MA69NANNANT01.18 BB00
0821wtt-m3_A_MA68_MA69NANNANT00.89 BB15
0831wtt-m4_A_MA68_MA69NANNANT00.93 BB02
0841wtt-m5_A_MA68_MA69NANNANT00.93 BB02
0851wtt-m6_A_MA68_MA69NANNANT00.88 BB00
0861wtt-m7_A_MA68_MA69NANNANT00.97 BB00
0871wtt-m8_A_MA68_MA69NANNANT01.15 BB15
0881wtt-m9_A_MA68_MA69NANNANT00.95 BB14
0891wtt-m10_A_MA69_G10NANNANT01.15 OP24
0901wtt-m11_A_MA69_G10NANNANT01.24 OP24
0911wtt-m1_A_MA69_G10NANNANT01.19 OP24
0921wtt-m2_A_MA69_G10NANNANT01.45 AA04
0931wtt-m3_A_MA69_G10NANNANT01.29 OP24
0941wtt-m4_A_MA69_G10NANNANT01.23 ZZ02
0951wtt-m5_A_MA69_G10NANNANT01.22 ZZ02
0961wtt-m6_A_MA69_G10NANNANT01.18 OP24
0971wtt-m7_A_MA69_G10NANNANT01.17 ZZ02
0981wtt-m8_A_MA69_G10NANNANT01.30 ZZ02
0991wtt-m9_A_MA69_G10NANNANT01.33 ZZ02
1001wtt-m10_A_G10_G11AAAAA00590.15 AA00
1011wtt-m11_A_G10_G11AAAAA00560.16 AA00
1021wtt-m1_A_G10_G11AAAAA00510.15 AA00
1031wtt-m2_A_G10_G11AAAAA00530.17 AA00
1041wtt-m3_A_G10_G11AAAAA00740.15 AA00
1051wtt-m4_A_G10_G11AAAAA00250.23 AA00
1061wtt-m5_A_G10_G11AAAAA00220.24 AA00
1071wtt-m6_A_G10_G11AAAAA00790.15 AA00
1081wtt-m7_A_G10_G11AAAAA00360.26 AA00
1091wtt-m8_A_G10_G11AAAAA00660.17 AA00
1101wtt-m9_A_G10_G11AAAAA00570.21 AA00
1111wtt-m10_A_G11_U12AAAAA00600.33 AA00
1121wtt-m11_A_G11_U12AAAAA00580.33 AA00
1131wtt-m1_A_G11_U12AAAAA00550.27 AA00
1141wtt-m2_A_G11_U12AAAAA00630.31 AA00
1151wtt-m3_A_G11_U12AAAAA00600.28 AA00
1161wtt-m4_A_G11_U12AAAAA00500.26 AA00
1171wtt-m5_A_G11_U12AAAAA00510.25 AA00
1181wtt-m6_A_G11_U12AAAAA00570.29 AA00
1191wtt-m7_A_G11_U12AAAAA00590.33 AA00
1201wtt-m8_A_G11_U12AAAAA00640.26 AA00
1211wtt-m9_A_G11_U12AAAAA00600.32 AA00
1221wtt-m10_A_U12_C13AAAAA00510.43 AA00
1231wtt-m11_A_U12_C13AAAAA00470.43 AA00
1241wtt-m1_A_U12_C13AAAAA00570.40 AA00
1251wtt-m2_A_U12_C13AAAAA00390.42 AA00
1261wtt-m3_A_U12_C13AAAAA00580.39 AA00
1271wtt-m4_A_U12_C13AAAAA00540.41 AA00
1281wtt-m5_A_U12_C13AAAAA00550.41 AA00
1291wtt-m6_A_U12_C13AAAAA00550.39 AA00
1301wtt-m7_A_U12_C13AAAAA00480.43 AA00
1311wtt-m8_A_U12_C13AAAAA00550.35 AA00
1321wtt-m9_A_U12_C13AAAAA00430.43 AA00
1331wtt-m10_A_C13_C14AAAAA00450.48 AA00
1341wtt-m11_A_C13_C14AAAAA00440.48 AA00
1351wtt-m1_A_C13_C14AAAAA00470.48 AA00
1361wtt-m2_A_C13_C14AAAAA00430.47 AA00
1371wtt-m3_A_C13_C14AAAAA00490.45 AA00
1381wtt-m4_A_C13_C14AAAAA00160.56 AA00
1391wtt-m5_A_C13_C14AAAAA00170.55 AA00
1401wtt-m6_A_C13_C14AAAAA00410.48 AA00
1411wtt-m7_A_C13_C14AAAAA00430.49 AA00
1421wtt-m8_A_C13_C14AAAAA00480.39 AA00
1431wtt-m9_A_C13_C14AAAAA00190.55 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N