Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38Q mutant, in complex with a G.T mismatch
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 33 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1wbd_E_DA1_DG2 | NAN | NANT | 0 | 0.48 |
| 02 | 1wbd_E_DG2_DC3 | BBB | BB00 | 63 | 0.22 |
| 03 | 1wbd_E_DC3_DT4 | BBB | BB00 | 73 | 0.23 |
| 04 | 1wbd_E_DT4_DG5 | BBB | BB00 | 77 | 0.22 |
| 05 | 1wbd_E_DG5_DC6 | B12 | BB04 | 69 | 0.28 |
| 06 | 1wbd_E_DC6_DC7 | B-A | BA05 | 69 | 0.17 |
| 07 | 1wbd_E_DC7_DA8 | BBB | BB01 | 28 | 0.35 |
| 08 | 1wbd_E_DA8_DG9 | NAN | NANT | 0 | 0.75 |
| 09 | 1wbd_E_DG9_DG10 | B-A | BA16 | 68 | 0.25 |
| 10 | 1wbd_E_DG10_DC11 | NAN | NANT | 0 | 0.43 |
| 11 | 1wbd_E_DC11_DA12 | A-B | AB03 | 32 | 0.36 |
| 12 | 1wbd_E_DA12_DC13 | BBB | BB00 | 76 | 0.17 |
| 13 | 1wbd_E_DC13_DC14 | miB | BB10 | 40 | 0.31 |
| 14 | 1wbd_E_DC14_DA15 | B12 | BB04 | 24 | 0.25 |
| 15 | 1wbd_E_DA15_DG16 | B12 | BB04 | 69 | 0.25 |
| 16 | 1wbd_E_DG16_DT17 | NAN | NANT | 0 | 0.50 |
| 17 | 1wbd_E_DT17_DG18 | NAN | NANT | 0 | 0.59 |
| 18 | 1wbd_F_DA14_DC15 | NAN | NANT | 0 | 0.42 |
| 19 | 1wbd_F_DC15_DT16 | BBB | BB00 | 28 | 0.46 |
| 20 | 1wbd_F_DT16_DG17 | BBB | BB00 | 91 | 0.15 |
| 21 | 1wbd_F_DG17_DG18 | B-A | BA08 | 63 | 0.24 |
| 22 | 1wbd_F_DG18_DT19 | AAA | AA00 | 75 | 0.23 |
| 23 | 1wbd_F_DT19_DG20 | NAN | NANT | 0 | 0.47 |
| 24 | 1wbd_F_DG20_DC21 | NAN | NANT | 0 | 0.80 |
| 25 | 1wbd_F_DC21_DT22 | NAN | NANT | 0 | 0.82 |
| 26 | 1wbd_F_DT22_DT23 | NAN | NANT | 0 | 0.38 |
| 27 | 1wbd_F_DT23_DG24 | BBB | BB00 | 82 | 0.25 |
| 28 | 1wbd_F_DG24_DG25 | BBB | BB00 | 77 | 0.29 |
| 29 | 1wbd_F_DG25_DC26 | BBB | BB00 | 60 | 0.19 |
| 30 | 1wbd_F_DC26_DA27 | BB2 | BB07 | 97 | 0.19 |
| 31 | 1wbd_F_DA27_DG28 | BBB | BB00 | 75 | 0.29 |
| 32 | 1wbd_F_DG28_DC29 | B-A | BA13 | 85 | 0.19 |
| 33 | 1wbd_F_DC29_DT30 | NAN | NANT | 0 | 0.53 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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