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Conformers: ABBIImiBZICOPNSYNN
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Solution structure of an dsDNA:LNA triplex

Results of the assignment of 300 detected steps in 20 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011w86-m10_A_DA1_DG2B-ABA05440.31 BA05
0021w86-m11_A_DA1_DG2B-ABA05580.29 BA05
0031w86-m12_A_DA1_DG2NANNANT00.77 AB02
0041w86-m13_A_DA1_DG2B-ABA05250.36 BA05
0051w86-m14_A_DA1_DG2B-ABA05660.25 BA05
0061w86-m15_A_DA1_DG2B-ABA05280.37 BA05
0071w86-m16_A_DA1_DG2B-ABA05660.25 BA05
0081w86-m17_A_DA1_DG2B-ABA05330.35 BA05
0091w86-m18_A_DA1_DG2B-ABA05730.23 BA05
0101w86-m19_A_DA1_DG2NANNANT00.79 AB02
0111w86-m1_A_DA1_DG2NANNANT00.87 AB02
0121w86-m20_A_DA1_DG2B-ABA05780.26 BA05
0131w86-m2_A_DA1_DG2NANNANT01.60 OP24
0141w86-m3_A_DA1_DG2B-ABA05610.29 BA05
0151w86-m4_A_DA1_DG2B-ABA05570.27 BA05
0161w86-m5_A_DA1_DG2B-ABA05690.22 BA05
0171w86-m6_A_DA1_DG2B-ABA05480.30 BA05
0181w86-m7_A_DA1_DG2B-ABA05170.43 BA05
0191w86-m8_A_DA1_DG2B-ABA05520.26 BA05
0201w86-m9_A_DA1_DG2B-ABA05780.19 BA05
0211w86-m10_A_DG2_DA3NANNANT01.23 OP24
0221w86-m11_A_DG2_DA3NANNANT01.28 OP24
0231w86-m12_A_DG2_DA3NANNANT01.17 OP24
0241w86-m13_A_DG2_DA3NANNANT01.19 OP24
0251w86-m14_A_DG2_DA3NANNANT00.36 BA10
0261w86-m15_A_DG2_DA3NANNANT01.16 OP24
0271w86-m16_A_DG2_DA3NANNANT01.24 OP24
0281w86-m17_A_DG2_DA3NANNANT00.56 BA16
0291w86-m18_A_DG2_DA3NANNANT01.22 OP24
0301w86-m19_A_DG2_DA3NANNANT00.68 AB02
0311w86-m1_A_DG2_DA3NANNANT01.22 OP24
0321w86-m20_A_DG2_DA3NANNANT00.37 BA10
0331w86-m2_A_DG2_DA3NANNANT01.23 OP24
0341w86-m3_A_DG2_DA3NANNANT01.24 OP24
0351w86-m4_A_DG2_DA3miBBB12340.43 BB12
0361w86-m5_A_DG2_DA3NANNANT01.20 OP24
0371w86-m6_A_DG2_DA3NANNANT01.17 OP24
0381w86-m7_A_DG2_DA3NANNANT01.17 OP24
0391w86-m8_A_DG2_DA3NANNANT00.70 AB02
0401w86-m9_A_DG2_DA3NANNANT00.57 BA16
0411w86-m10_A_DA3_DG4BBwBB16500.51 BB16
0421w86-m11_A_DA3_DG4NANNANT00.67 AB02
0431w86-m12_A_DA3_DG4NANNANT00.65 AB02
0441w86-m13_A_DA3_DG4BBwBB16430.54 BB16
0451w86-m14_A_DA3_DG4A-BAB02330.66 AB02
0461w86-m15_A_DA3_DG4BBwBB16510.48 BB16
0471w86-m16_A_DA3_DG4NANNANT00.67 AB02
0481w86-m17_A_DA3_DG4BBwBB16530.50 BB16
0491w86-m18_A_DA3_DG4BBwBB16470.51 BB16
0501w86-m19_A_DA3_DG4NANNANT00.92 AB02
0511w86-m1_A_DA3_DG4BBwBB16460.55 BB16
0521w86-m20_A_DA3_DG4BBwBB16540.51 BB16
0531w86-m2_A_DA3_DG4NANNANT00.88 AB02
0541w86-m3_A_DA3_DG4BBwBB16530.50 BB16
0551w86-m4_A_DA3_DG4BBwBB16730.38 BB16
0561w86-m5_A_DA3_DG4NANNANT00.66 AB02
0571w86-m6_A_DA3_DG4BBwBB16480.52 BB16
0581w86-m7_A_DA3_DG4BBwBB16520.48 BB16
0591w86-m8_A_DA3_DG4BBwBB16650.44 BB16
0601w86-m9_A_DA3_DG4NANNANT00.88 AB02
0611w86-m10_A_DG4_DA5miBBB12800.25 BB12
0621w86-m11_A_DG4_DA5miBBB12780.28 BB12
0631w86-m12_A_DG4_DA5miBBB12830.30 BB12
0641w86-m13_A_DG4_DA5miBBB12780.23 BB12
0651w86-m14_A_DG4_DA5B-ABA16410.47 BA16
0661w86-m15_A_DG4_DA5miBBB12870.30 BB12
0671w86-m16_A_DG4_DA5miBBB12820.31 BB12
0681w86-m17_A_DG4_DA5miBBB12760.25 BB12
0691w86-m18_A_DG4_DA5miBBB12830.23 BB12
0701w86-m19_A_DG4_DA5miBBB12830.22 BB12
0711w86-m1_A_DG4_DA5miBBB12770.34 BB12
0721w86-m20_A_DG4_DA5miBBB12760.34 BB12
0731w86-m2_A_DG4_DA5miBBB12870.32 BB12
0741w86-m3_A_DG4_DA5NANNANT00.44 BA13
0751w86-m4_A_DG4_DA5B-ABA13360.41 BA13
0761w86-m5_A_DG4_DA5miBBB12810.29 BB12
0771w86-m6_A_DG4_DA5miBBB12770.32 BB12
0781w86-m7_A_DG4_DA5miBBB12850.27 BB12
0791w86-m8_A_DG4_DA5miBBB12830.23 BB12
0801w86-m9_A_DG4_DA5miBBB12770.26 BB12
0811w86-m10_A_DA5_DG6NANNANT00.74 BB03
0821w86-m11_A_DA5_DG6NANNANT00.72 BB03
0831w86-m12_A_DA5_DG6BBwBB16200.45 BB16
0841w86-m13_A_DA5_DG6NANNANT00.78 BB03
0851w86-m14_A_DA5_DG6A-BAB01240.44 AB01
0861w86-m15_A_DA5_DG6BBwBB16310.42 BB16
0871w86-m16_A_DA5_DG6BBwBB16180.46 BB16
0881w86-m17_A_DA5_DG6NANNANT00.79 BB03
0891w86-m18_A_DA5_DG6NANNANT00.79 BB03
0901w86-m19_A_DA5_DG6NANNANT00.79 BB03
0911w86-m1_A_DA5_DG6BBwBB16310.43 BB16
0921w86-m20_A_DA5_DG6BBwBB16330.42 BB16
0931w86-m2_A_DA5_DG6BBwBB16310.45 BB16
0941w86-m3_A_DA5_DG6NANNANT00.91 AB02
0951w86-m4_A_DA5_DG6NANNANT00.44 AB04
0961w86-m5_A_DA5_DG6BBwBB16250.45 BB16
0971w86-m6_A_DA5_DG6BBwBB16250.42 BB16
0981w86-m7_A_DA5_DG6BBwBB16150.46 BB16
0991w86-m8_A_DA5_DG6NANNANT00.79 BB03
1001w86-m9_A_DA5_DG6NANNANT00.89 BB03
1011w86-m10_A_DG6_DA7BBBBB01790.19 BB01
1021w86-m11_A_DG6_DA7BBBBB01860.14 BB01
1031w86-m12_A_DG6_DA7BBBBB01830.23 BB01
1041w86-m13_A_DG6_DA7BBBBB01910.13 BB01
1051w86-m14_A_DG6_DA7BBBBB01920.14 BB01
1061w86-m15_A_DG6_DA7BBBBB01850.22 BB01
1071w86-m16_A_DG6_DA7BBBBB01810.22 BB01
1081w86-m17_A_DG6_DA7BBBBB01900.13 BB01
1091w86-m18_A_DG6_DA7BBBBB01830.24 BB01
1101w86-m19_A_DG6_DA7BBBBB01880.16 BB01
1111w86-m1_A_DG6_DA7BBBBB01690.18 BB01
1121w86-m20_A_DG6_DA7BBBBB01870.21 BB01
1131w86-m2_A_DG6_DA7BBBBB01860.20 BB01
1141w86-m3_A_DG6_DA7BBBBB01910.15 BB01
1151w86-m4_A_DG6_DA7BBBBB01860.17 BB01
1161w86-m5_A_DG6_DA7BBBBB01860.20 BB01
1171w86-m6_A_DG6_DA7BBBBB01840.25 BB01
1181w86-m7_A_DG6_DA7BBBBB01790.24 BB01
1191w86-m8_A_DG6_DA7BBBBB01920.12 BB01
1201w86-m9_A_DG6_DA7NANNANT00.64 AB02
1211w86-m10_A_DA7_DA8NANNANT00.83 AB02
1221w86-m11_A_DA7_DA8NANNANT00.75 AB02
1231w86-m12_A_DA7_DA8BBBBB01810.19 BB01
1241w86-m13_A_DA7_DA8BBBBB00640.32 BB00
1251w86-m14_A_DA7_DA8BBBBB00670.29 BB00
1261w86-m15_A_DA7_DA8BBBBB00720.27 BB00
1271w86-m16_A_DA7_DA8NANNANT00.74 AB02
1281w86-m17_A_DA7_DA8BBBBB00670.31 BB00
1291w86-m18_A_DA7_DA8NANNANT00.31 BB03
1301w86-m19_A_DA7_DA8BBBBB00690.28 BB00
1311w86-m1_A_DA7_DA8BBBBB00110.31 BB00
1321w86-m20_A_DA7_DA8BBBBB00710.27 BB00
1331w86-m2_A_DA7_DA8BBBBB00710.30 BB00
1341w86-m3_A_DA7_DA8BBBBB00610.24 BB00
1351w86-m4_A_DA7_DA8NANNANT00.74 AB02
1361w86-m5_A_DA7_DA8BBBBB00590.31 BB00
1371w86-m6_A_DA7_DA8BBBBB00680.30 BB00
1381w86-m7_A_DA7_DA8BBBBB00390.28 BB00
1391w86-m8_A_DA7_DA8BBBBB00710.28 BB00
1401w86-m9_A_DA7_DA8BBBBB01720.28 BB01
1411w86-m10_B_DT9_DT10BBBBB00700.27 BB00
1421w86-m11_B_DT9_DT10BBBBB00720.25 BB00
1431w86-m12_B_DT9_DT10BBBBB01780.23 BB01
1441w86-m13_B_DT9_DT10NANNANT00.81 AB02
1451w86-m14_B_DT9_DT10BBBBB00710.25 BB00
1461w86-m15_B_DT9_DT10BBBBB00670.24 BB00
1471w86-m16_B_DT9_DT10BBBBB01820.17 BB01
1481w86-m17_B_DT9_DT10BBBBB00660.28 BB00
1491w86-m18_B_DT9_DT10BBBBB00740.26 BB00
1501w86-m19_B_DT9_DT10BBBBB00680.24 BB00
1511w86-m1_B_DT9_DT10BBBBB01770.23 BB01
1521w86-m20_B_DT9_DT10NANNANT00.63 AB02
1531w86-m2_B_DT9_DT10BBBBB00700.23 BB00
1541w86-m3_B_DT9_DT10BBBBB00720.21 BB00
1551w86-m4_B_DT9_DT10BBBBB00680.22 BB00
1561w86-m5_B_DT9_DT10BBBBB00630.24 BB00
1571w86-m6_B_DT9_DT10BBBBB01770.22 BB01
1581w86-m7_B_DT9_DT10BBBBB00620.27 BB00
1591w86-m8_B_DT9_DT10BBBBB01810.19 BB01
1601w86-m9_B_DT9_DT10B-ABA05850.22 BA05
1611w86-m10_B_DT10_DC11BBBBB01810.22 BB01
1621w86-m11_B_DT10_DC11BBwBB03410.40 BB03
1631w86-m12_B_DT10_DC11BBBBB01900.21 BB01
1641w86-m13_B_DT10_DC11BBBBB01880.26 BB01
1651w86-m14_B_DT10_DC11BBBBB01830.27 BB01
1661w86-m15_B_DT10_DC11BBBBB01890.19 BB01
1671w86-m16_B_DT10_DC11NANNANT00.80 AB02
1681w86-m17_B_DT10_DC11BBBBB01810.23 BB01
1691w86-m18_B_DT10_DC11B-ABA05300.21 BA05
1701w86-m19_B_DT10_DC11BBBBB01890.21 BB01
1711w86-m1_B_DT10_DC11BBBBB01800.21 BB01
1721w86-m20_B_DT10_DC11BBBBB01630.27 BB01
1731w86-m2_B_DT10_DC11BBBBB01850.23 BB01
1741w86-m3_B_DT10_DC11BBBBB01880.22 BB01
1751w86-m4_B_DT10_DC11BBBBB01910.21 BB01
1761w86-m5_B_DT10_DC11BBBBB01880.24 BB01
1771w86-m6_B_DT10_DC11BBBBB01880.23 BB01
1781w86-m7_B_DT10_DC11BBBBB01840.20 BB01
1791w86-m8_B_DT10_DC11BBBBB01840.19 BB01
1801w86-m9_B_DT10_DC11NANNANT00.85 AB02
1811w86-m10_B_DC11_DT12BBBBB01480.27 BB01
1821w86-m11_B_DC11_DT12BBBBB01520.20 BB01
1831w86-m12_B_DC11_DT12BBBBB01430.28 BB01
1841w86-m13_B_DC11_DT12BBwBB03140.45 BB03
1851w86-m14_B_DC11_DT12BBwBB0390.49 BB03
1861w86-m15_B_DC11_DT12BBBBB01490.26 BB01
1871w86-m16_B_DC11_DT12BBBBB01550.24 BB01
1881w86-m17_B_DC11_DT12BBBBB01480.23 BB01
1891w86-m18_B_DC11_DT12BBBBB01480.28 BB01
1901w86-m19_B_DC11_DT12BBBBB01550.23 BB01
1911w86-m1_B_DC11_DT12BBBBB01520.25 BB01
1921w86-m20_B_DC11_DT12BBwBB03130.44 BB03
1931w86-m2_B_DC11_DT12BBBBB01440.25 BB01
1941w86-m3_B_DC11_DT12BBBBB01150.30 BB01
1951w86-m4_B_DC11_DT12BBwBB03330.47 BB03
1961w86-m5_B_DC11_DT12BBwBB03120.46 BB03
1971w86-m6_B_DC11_DT12BBwBB03100.47 BB03
1981w86-m7_B_DC11_DT12BBBBB01630.23 BB01
1991w86-m8_B_DC11_DT12B-ABA05210.16 BA05
2001w86-m9_B_DC11_DT12BBwBB03200.43 BB03
2011w86-m10_B_DT12_DC13B-ABA05270.26 BA05
2021w86-m11_B_DT12_DC13BBBBB01730.18 BB01
2031w86-m12_B_DT12_DC13B-ABA05130.35 BA05
2041w86-m13_B_DT12_DC13BBBBB00650.20 BB00
2051w86-m14_B_DT12_DC13B-ABA05260.27 BA05
2061w86-m15_B_DT12_DC13AAAAA02160.54 AA02
2071w86-m16_B_DT12_DC13BBBBB01740.17 BB01
2081w86-m17_B_DT12_DC13NANNANT00.40 BB03
2091w86-m18_B_DT12_DC13AAAAA02250.55 AA02
2101w86-m19_B_DT12_DC13AAAAA02150.57 AA02
2111w86-m1_B_DT12_DC13NANNANT00.38 BB03
2121w86-m20_B_DT12_DC13B-ABA10380.45 BA10
2131w86-m2_B_DT12_DC13NANNANT00.38 BB03
2141w86-m3_B_DT12_DC13NANNANT00.44 AA01
2151w86-m4_B_DT12_DC13BBBBB00660.33 BB00
2161w86-m5_B_DT12_DC13BBBBB00690.20 BB00
2171w86-m6_B_DT12_DC13BBBBB00650.19 BB00
2181w86-m7_B_DT12_DC13BBBBB00500.19 BB00
2191w86-m8_B_DT12_DC13BBBBB01500.26 BB01
2201w86-m9_B_DT12_DC13B-ABA05110.21 BA05
2211w86-m10_B_DC13_DT14NANNANT00.43 AA01
2221w86-m11_B_DC13_DT14B-ABA01590.18 BA01
2231w86-m12_B_DC13_DT14NANNANT00.61 AB02
2241w86-m13_B_DC13_DT14B-ABA05670.20 BA05
2251w86-m14_B_DC13_DT14NANNANT00.47 AA01
2261w86-m15_B_DC13_DT14NANNANT00.58 AB02
2271w86-m16_B_DC13_DT14B-ABA05760.17 BA05
2281w86-m17_B_DC13_DT14NANNANT00.63 BA10
2291w86-m18_B_DC13_DT14NANNANT00.45 AA01
2301w86-m19_B_DC13_DT14NANNANT00.46 AA01
2311w86-m1_B_DC13_DT14NANNANT00.48 BA10
2321w86-m20_B_DC13_DT14A-BAB01170.32 AB01
2331w86-m2_B_DC13_DT14NANNANT00.57 BA10
2341w86-m3_B_DC13_DT14NANNANT00.63 AB02
2351w86-m4_B_DC13_DT14B-ABA16630.44 BA16
2361w86-m5_B_DC13_DT14B-ABA01310.20 BA01
2371w86-m6_B_DC13_DT14B-ABA05680.22 BA05
2381w86-m7_B_DC13_DT14miBBB12880.31 BB12
2391w86-m8_B_DC13_DT14B-ABA05800.18 BA05
2401w86-m9_B_DC13_DT14NANNANT00.62 AB02
2411w86-m10_B_DT14_DC15NANNANT00.31 BA05
2421w86-m11_B_DT14_DC15NANNANT00.48 AB02
2431w86-m12_B_DT14_DC15NANNANT00.48 AA00
2441w86-m13_B_DT14_DC15NANNANT00.43 AA00
2451w86-m14_B_DT14_DC15NANNANT00.35 BA05
2461w86-m15_B_DT14_DC15B-ABA0590.20 BA05
2471w86-m16_B_DT14_DC15AAAAA00480.44 AA00
2481w86-m17_B_DT14_DC15NANNANT00.43 AA00
2491w86-m18_B_DT14_DC15NANNANT00.34 BA05
2501w86-m19_B_DT14_DC15NANNANT00.61 BA10
2511w86-m1_B_DT14_DC15NANNANT01.61 OP24
2521w86-m20_B_DT14_DC15B-ABA0580.22 BA05
2531w86-m2_B_DT14_DC15NANNANT00.64 AB02
2541w86-m3_B_DT14_DC15B-ABA05190.30 BA05
2551w86-m4_B_DT14_DC15AAAAA00280.50 AA00
2561w86-m5_B_DT14_DC15AAAAA00570.41 AA00
2571w86-m6_B_DT14_DC15NANNANT00.46 AA00
2581w86-m7_B_DT14_DC15NANNANT00.60 AB03
2591w86-m8_B_DT14_DC15NANNANT00.45 AA00
2601w86-m9_B_DT14_DC15AAAAA02140.59 AA02
2611w86-m10_B_DC15_DT16AAAAA02610.51 AA02
2621w86-m11_B_DC15_DT16AAAAA02600.44 AA02
2631w86-m12_B_DC15_DT16AAAAA02480.46 AA02
2641w86-m13_B_DC15_DT16AAAAA02530.41 AA02
2651w86-m14_B_DC15_DT16AAAAA02690.51 AA02
2661w86-m15_B_DC15_DT16AAAAA02560.43 AA02
2671w86-m16_B_DC15_DT16AAAAA02250.42 AA02
2681w86-m17_B_DC15_DT16AAAAA02300.32 AA02
2691w86-m18_B_DC15_DT16AAAAA02710.51 AA02
2701w86-m19_B_DC15_DT16NANNANT00.48 AA00
2711w86-m1_B_DC15_DT16AAAAA02440.44 AA02
2721w86-m20_B_DC15_DT16NANNANT00.58 BB03
2731w86-m2_B_DC15_DT16AAAAA02490.43 AA02
2741w86-m3_B_DC15_DT16NANNANT00.58 BA10
2751w86-m4_B_DC15_DT16AAAAA02630.44 AA02
2761w86-m5_B_DC15_DT16AAAAA02290.40 AA02
2771w86-m6_B_DC15_DT16AAAAA02390.54 AA02
2781w86-m7_B_DC15_DT16NANNANT00.65 BA10
2791w86-m8_B_DC15_DT16NANNANT00.34 AA02
2801w86-m9_B_DC15_DT16AAAAA02440.47 AA02
2811w86-m10_C_DT23_DT24AAAAA00570.25 AA00
2821w86-m11_C_DT23_DT24AAAAA00530.25 AA00
2831w86-m12_C_DT23_DT24AAAAA00710.22 AA00
2841w86-m13_C_DT23_DT24AAAAA00650.23 AA00
2851w86-m14_C_DT23_DT24AAAAA00670.23 AA00
2861w86-m15_C_DT23_DT24AAAAA00670.22 AA00
2871w86-m16_C_DT23_DT24AAAAA00670.23 AA00
2881w86-m17_C_DT23_DT24AAAAA00500.25 AA00
2891w86-m18_C_DT23_DT24NANNANT00.47 AB02
2901w86-m19_C_DT23_DT24AAAAA00570.24 AA00
2911w86-m1_C_DT23_DT24AAAAA00650.23 AA00
2921w86-m20_C_DT23_DT24AAAAA00570.24 AA00
2931w86-m2_C_DT23_DT24NANNANT00.48 AB02
2941w86-m3_C_DT23_DT24AAAAA00700.22 AA00
2951w86-m4_C_DT23_DT24AAAAA00690.22 AA00
2961w86-m5_C_DT23_DT24AAAAA00640.23 AA00
2971w86-m6_C_DT23_DT24NANNANT00.68 AB02
2981w86-m7_C_DT23_DT24AAAAA00690.22 AA00
2991w86-m8_C_DT23_DT24AAAAA00550.24 AA00
3001w86-m9_C_DT23_DT24AAAAA00530.24 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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