Conformers:
ABBIImiBZICOPNSYNN
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CO-CRYSTAL STRUCTURE OF THE HNF-3/FORK HEAD DNA-RECOGNITION MOTIF RESEMBLES HISTONE H5
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1vtn_A_DG1_DA2 | BBB | BB00 | 13 | 0.38 |
| 02 | 1vtn_A_DA2_DC3 | NAN | NANT | 0 | 0.48 |
| 03 | 1vtn_A_DC3_DT4 | BBB | BB00 | 14 | 0.26 |
| 04 | 1vtn_A_DT4_DA5 | BB2 | BB07 | 49 | 0.30 |
| 05 | 1vtn_A_DA5_DA6 | BBB | BB00 | 70 | 0.18 |
| 06 | 1vtn_A_DA6_DG7 | BBB | BB00 | 83 | 0.19 |
| 07 | 1vtn_A_DG7_DT8 | BBB | BB00 | 55 | 0.34 |
| 08 | 1vtn_A_DT8_DC9 | BBB | BB00 | 64 | 0.29 |
| 09 | 1vtn_A_DC9_DA10 | BBB | BB00 | 64 | 0.26 |
| 10 | 1vtn_A_DA10_DA11 | B12 | BB04 | 44 | 0.32 |
| 11 | 1vtn_A_DA11_DC12 | BBB | BB00 | 54 | 0.25 |
| 12 | 1vtn_A_DC12_DC13 | miB | BB10 | 71 | 0.33 |
| 13 | 1vtn_B_DG21_DG22 | BBw | BB16 | 42 | 0.45 |
| 14 | 1vtn_B_DG22_DT23 | NAN | NANT | 0 | 0.29 |
| 15 | 1vtn_B_DT23_DT24 | B-A | BA05 | 55 | 0.22 |
| 16 | 1vtn_B_DT24_DG25 | NAN | NANT | 0 | 0.46 |
| 17 | 1vtn_B_DG25_DA26 | BB2 | BB07 | 22 | 0.29 |
| 18 | 1vtn_B_DA26_DC27 | BBB | BB01 | 21 | 0.32 |
| 19 | 1vtn_B_DC27_DT28 | BBB | BB00 | 32 | 0.40 |
| 20 | 1vtn_B_DT28_DT29 | BBB | BB00 | 49 | 0.21 |
| 21 | 1vtn_B_DT29_DA30 | B12 | BB04 | 38 | 0.51 |
| 22 | 1vtn_B_DA30_DG31 | NAN | NANT | 0 | 0.34 |
| 23 | 1vtn_B_DG31_DT32 | BBw | BB02 | 55 | 0.39 |
| 24 | 1vtn_B_DT32_DC33 | BBB | BB00 | 29 | 0.38 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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