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Conformers: ABBIImiBZICOPNSYNN
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MOLECULAR STRUCTURE OF THE NETROPSIN-D(CGCGATATCGCG) COMPLEX: DNA CONFORMATION IN AN ALTERNATING AT SEGMENT; CONFORMATION 1

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011vtj_A_DC1_DG2NANNANT00.59 AB04
021vtj_A_DG2_DC3NANNANT00.81 BB14
031vtj_A_DC3_DG4NANNANT00.67 BB15
041vtj_A_DG4_DA5NANNANT00.80 BB14
051vtj_A_DA5_DT6NANNANT00.55 AB02
061vtj_A_DT6_DA7NANNANT00.43 BB00
071vtj_A_DA7_DT8NANNANT00.43 BB04
081vtj_A_DT8_DC9NANNANT00.57 BB08
091vtj_A_DC9_DG10NANNANT00.72 BB00
101vtj_A_DG10_DC11NANNANT00.57 BA17
111vtj_A_DC11_DG12NANNANT00.86 AA10
121vtj_B_DC13_DG14NANNANT00.61 BB13
131vtj_B_DG14_DC15BBBBB0090.64 BB00
141vtj_B_DC15_DG16NANNANT00.60 BA08
151vtj_B_DG16_DA17NANNANT00.39 AB01
161vtj_B_DA17_DT18NANNANT00.53 BB00
171vtj_B_DT18_DA19NANNANT00.62 BA08
181vtj_B_DA19_DT20NANNANT00.60 AB01
191vtj_B_DT20_DC21BBBBB00170.43 BB00
201vtj_B_DC21_DG22NANNANT00.26 BB00
211vtj_B_DG22_DC23B-ABA08360.44 BA08
221vtj_B_DC23_DG24NANNANT00.77 AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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