DNATCO v4.1: results

Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog

Results of the assignment of 61 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1vfg_C_G1_G2	NAN	NANT	0	0.77	AA12
02	1vfg_C_G2_C3	AAA	AA00	50	0.27	AA00
03	1vfg_C_C3_C4	AAw	AA01	16	0.51	AA01
04	1vfg_C_C4_A5	NAN	NANT	0	0.94	AA11
05	1vfg_C_A5_G6	AAA	AA08	49	0.39	AA08
06	1vfg_C_G6_G7	AAw	AA01	61	0.29	AA01
07	1vfg_C_G49_G50	AAA	AA00	82	0.22	AA00
08	1vfg_C_G50_C51	AAA	AA08	26	0.52	AA08
09	1vfg_C_C51_G52	AAw	AA01	37	0.38	AA01
10	1vfg_C_G52_G53	AAw	AA01	74	0.35	AA01
11	1vfg_C_G53_U54	AAA	AA00	22	0.47	AA00
12	1vfg_C_U54_U55	NAN	NANT	0	0.79	BB2S
13	1vfg_C_U55_C56	NAN	NANT	0	1.14	ZZS1
14	1vfg_C_C56_G57	NAN	NANT	0	0.62	BB13
15	1vfg_C_G57_A58	NAN	NANT	0	0.77	AAS1
16	1vfg_C_A58_U59	NAN	NANT	0	0.96	OP03
17	1vfg_C_U59_U60	NAN	NANT	0	1.11	OP12
18	1vfg_C_U60_C61	NAN	NANT	0	0.61	OP12
19	1vfg_C_C61_C62	NAN	NANT	0	0.35	AA11
20	1vfg_C_C62_G63	NAN	NANT	0	0.63	AA12
21	1vfg_C_G63_C64	AAA	AA08	16	0.48	AA08
22	1vfg_C_C64_C65	AAA	AA09	60	0.30	AA09
23	1vfg_C_C65_C66	AAA	AA02	16	0.46	AA02
24	1vfg_C_C66_C67	AAA	AA02	29	0.32	AA02
25	1vfg_C_C67_U68	NAN	NANT	0	0.65	AA04
26	1vfg_C_U68_G69	AAA	AA00	52	0.41	AA00
27	1vfg_C_G69_G70	AAw	AA01	17	0.33	AA01
28	1vfg_C_G70_C71	AAA	AA08	13	0.44	AA08
29	1vfg_C_C71_C72	NAN	NANT	0	0.58	AA04
30	1vfg_D_G1_G2	NAN	NANT	0	0.77	AA12
31	1vfg_D_G2_C3	AAA	AA00	51	0.26	AA00
32	1vfg_D_C3_C4	AAw	AA01	16	0.50	AA01
33	1vfg_D_C4_A5	NAN	NANT	0	0.94	AA11
34	1vfg_D_A5_G6	AAA	AA08	50	0.39	AA08
35	1vfg_D_G6_G7	AAw	AA01	60	0.29	AA01
36	1vfg_D_G49_G50	AAA	AA00	82	0.22	AA00
37	1vfg_D_G50_C51	AAA	AA08	27	0.51	AA08
38	1vfg_D_C51_G52	AAw	AA01	38	0.37	AA01
39	1vfg_D_G52_G53	AAw	AA01	74	0.35	AA01
40	1vfg_D_G53_U54	AAA	AA00	24	0.47	AA00
41	1vfg_D_U54_U55	NAN	NANT	0	0.79	BB2S
42	1vfg_D_U55_C56	NAN	NANT	0	1.12	ZZS1
43	1vfg_D_C56_G57	NAN	NANT	0	0.62	BB13
44	1vfg_D_G57_A58	NAN	NANT	0	0.77	AAS1
45	1vfg_D_A58_U59	NAN	NANT	0	0.96	OP03
46	1vfg_D_U59_U60	NAN	NANT	0	1.10	OP12
47	1vfg_D_U60_C61	NAN	NANT	0	0.62	OP12
48	1vfg_D_C61_C62	NAN	NANT	0	0.35	AA11
49	1vfg_D_C62_G63	NAN	NANT	0	0.63	AA12
50	1vfg_D_G63_C64	AAA	AA08	15	0.48	AA08
51	1vfg_D_C64_C65	AAA	AA09	59	0.30	AA09
52	1vfg_D_C65_C66	AAA	AA02	18	0.46	AA02
53	1vfg_D_C66_C67	AAA	AA02	29	0.32	AA02
54	1vfg_D_C67_U68	NAN	NANT	0	0.65	AA04
55	1vfg_D_U68_G69	AAA	AA00	52	0.41	AA00
56	1vfg_D_G69_G70	AAw	AA01	18	0.34	AA01
57	1vfg_D_G70_C71	AAA	AA08	13	0.45	AA08
58	1vfg_D_C71_C72	NAN	NANT	0	0.57	AA04
59	1vfg_D_C72_A73	AAA	AA08	45	0.50	AA08
60	1vfg_D_A73_C74	NAN	NANT	0	0.79	AB05
61	1vfg_D_C74_C75	NAN	NANT	0	0.56	OP12

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 61 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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