DNATCO v4.1: results

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, cleaved in Imidazole and Mg2+ solutions

Results of the assignment of 71 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1vc6_B_G101_G102	AAA	AA00	62	0.34	AA00
02	1vc6_B_G102_C103	AAA	AA00	56	0.35	AA00
03	1vc6_B_C103_C104	AAA	AA00	76	0.18	AA00
04	1vc6_B_C104_G105	AAA	AA00	91	0.17	AA00
05	1vc6_B_G105_G106	AAA	AA00	85	0.20	AA00
06	1vc6_B_G106_C107	AAA	AA00	87	0.18	AA00
07	1vc6_B_C107_A108	AAA	AA00	94	0.20	AA00
08	1vc6_B_A108_U109	AAA	AA00	58	0.28	AA00
09	1vc6_B_U109_G110	NAN	NANT	0	0.75	OP29
10	1vc6_B_G110_G111	AAA	AA00	44	0.34	AA00
11	1vc6_B_G111_U112	AAA	AA00	77	0.17	AA00
12	1vc6_B_U112_C113	AAw	AA10	53	0.25	AA10
13	1vc6_B_C113_C114	AAA	AA00	42	0.31	AA00
14	1vc6_B_C114_C115	AAA	AA00	89	0.11	AA00
15	1vc6_B_C115_A116	AAA	AA00	94	0.14	AA00
16	1vc6_B_A116_G117	AAA	AA00	78	0.24	AA00
17	1vc6_B_G117_C118	AAA	AA00	77	0.14	AA00
18	1vc6_B_C118_C119	AAA	AA00	79	0.28	AA00
19	1vc6_B_C119_U120	A-B	AB05	81	0.17	AB05
20	1vc6_B_U120_C121	OPN	OP13	44	0.80	OP13
21	1vc6_B_C121_C122	AAw	AA01	45	0.45	AA01
22	1vc6_B_C122_U123	NAN	NANT	0	2.01	OP27
23	1vc6_B_U123_C124	NAN	NANT	0	1.33	OP31
24	1vc6_B_C124_G125	NAN	NANT	0	1.11	BA16
25	1vc6_B_G125_C126	NAN	NANT	0	1.36	OP24
26	1vc6_B_C126_U127	NAN	NANT	0	0.74	OP30
27	1vc6_B_U127_G128	NAN	NANT	0	1.18	OP31
28	1vc6_B_G128_G129	AAA	AA00	63	0.36	AA00
29	1vc6_B_G129_C130	AAA	AA00	94	0.12	AA00
30	1vc6_B_C130_G131	NAN	NANT	0	1.04	OP31
31	1vc6_B_G131_C132	AAA	AA00	65	0.22	AA00
32	1vc6_B_C132_C133	AAA	AA00	89	0.23	AA00
33	1vc6_B_C133_G134	AAA	AA00	54	0.27	AA00
34	1vc6_B_G134_G135	AAA	AA00	59	0.26	AA00
35	1vc6_B_G135_C136	AAA	AA04	40	0.46	AA04
36	1vc6_B_C136_U137	AAA	AA00	81	0.24	AA00
37	1vc6_B_U137_G138	AAu	AA12	92	0.12	AA12
38	1vc6_B_G138_G139	AAA	AA00	81	0.20	AA00
39	1vc6_B_G139_G140	AAA	AA00	81	0.18	AA00
40	1vc6_B_G140_C141	NAN	NANT	0	0.65	BB13
41	1vc6_B_C141_A142	NAN	NANT	0	0.51	OP26
42	1vc6_B_A142_A143	AAA	AA00	68	0.12	AA00
43	1vc6_B_A143_C144	AAA	AA00	87	0.15	AA00
44	1vc6_B_C144_A145	AAA	AA00	95	0.16	AA00
45	1vc6_B_A145_C146	AAA	AA00	86	0.14	AA00
46	1vc6_B_C146_C147	AAA	AA00	95	0.19	AA00
47	1vc6_B_C147_A148	AAA	AA00	75	0.27	AA00
48	1vc6_B_A148_U149	AAA	AA00	78	0.22	AA00
49	1vc6_B_U149_U150	ICL	IC02	94	0.14	IC02
50	1vc6_B_U150_G151	ZZZ	ZZ02	66	0.65	ZZ02
51	1vc6_B_G151_C152	NAN	NANT	0	0.83	IC02
52	1vc6_B_C152_A153	NAN	NANT	0	0.90	AA12
53	1vc6_B_A153_C154	AAA	AA00	83	0.18	AA00
54	1vc6_B_C154_U155	NAN	NANT	0	0.57	OP21
55	1vc6_B_U155_C156	NAN	NANT	0	0.46	OP26
56	1vc6_B_C156_C157	AAA	AA00	69	0.20	AA00
57	1vc6_B_C157_G158	NAN	NANT	0	1.56	OP11
58	1vc6_B_G158_G159	AAA	AA00	71	0.18	AA00
59	1vc6_B_G159_U160	AAA	AA00	98	0.09	AA00
60	1vc6_B_U160_G161	AAA	AA00	98	0.18	AA00
61	1vc6_B_G161_G162	AAA	AA00	49	0.29	AA00
62	1vc6_B_G162_U163	NAN	NANT	0	1.79	AA13
63	1vc6_B_U163_G164	NAN	NANT	0	1.98	OP14
64	1vc6_B_G164_A165	NAN	NANT	0	1.75	OP16
65	1vc6_B_A165_A166	AAA	AA09	67	0.24	AA09
66	1vc6_B_A166_U167	NAN	NANT	0	0.66	IC07
67	1vc6_B_U167_G168	AAw	AA01	62	0.35	AA01
68	1vc6_B_G168_G169	AAA	AA00	93	0.15	AA00
69	1vc6_B_G169_G170	AAA	AA00	79	0.23	AA00
70	1vc6_B_G170_A171	AAA	AA00	77	0.23	AA00
71	1vc6_B_A171_C172	AAw	AA06	78	0.22	AA06

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 71 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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