DNATCO v4.1: results

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in EDTA solution

Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1vbx_B_U100_G101	NAN	NANT	0	2.55	OP01
02	1vbx_B_G101_G102	AAA	AA08	31	0.43	AA08
03	1vbx_B_G102_C103	AAA	AA00	22	0.42	AA00
04	1vbx_B_C103_C104	AAA	AA00	35	0.25	AA00
05	1vbx_B_C104_G105	AAA	AA00	77	0.26	AA00
06	1vbx_B_G105_G106	AAA	AA00	58	0.27	AA00
07	1vbx_B_G106_C107	AAA	AA00	64	0.29	AA00
08	1vbx_B_C107_A108	AAA	AA00	73	0.23	AA00
09	1vbx_B_A108_U109	AAA	AA00	74	0.27	AA00
10	1vbx_B_U109_G110	NAN	NANT	0	0.79	OP29
11	1vbx_B_G110_G111	AAA	AA00	77	0.26	AA00
12	1vbx_B_G111_U112	AAA	AA00	76	0.16	AA00
13	1vbx_B_U112_C113	NAN	NANT	0	0.36	AA10
14	1vbx_B_C113_C114	AAA	AA00	52	0.40	AA00
15	1vbx_B_C114_C115	AAA	AA00	63	0.30	AA00
16	1vbx_B_C115_A116	AAA	AA00	87	0.26	AA00
17	1vbx_B_A116_G117	AAA	AA00	62	0.26	AA00
18	1vbx_B_G117_C118	AAA	AA00	89	0.18	AA00
19	1vbx_B_C118_C119	AAA	AA00	74	0.30	AA00
20	1vbx_B_C119_U120	A-B	AB05	47	0.19	AB05
21	1vbx_B_U120_C121	OPN	OP13	40	0.77	OP13
22	1vbx_B_C121_C122	AAw	AA01	33	0.43	AA01
23	1vbx_B_C122_U123	NAN	NANT	0	1.93	OP19
24	1vbx_B_U123_C124	NAN	NANT	0	1.26	OP31
25	1vbx_B_C124_G125	NAN	NANT	0	1.11	BA16
26	1vbx_B_G125_C126	NAN	NANT	0	1.43	OP24
27	1vbx_B_C126_U127	NAN	NANT	0	0.83	OP30
28	1vbx_B_U127_G128	NAN	NANT	0	1.21	OP31
29	1vbx_B_G128_G129	AAA	AA08	86	0.18	AA08
30	1vbx_B_G129_C130	AAA	AA00	93	0.13	AA00
31	1vbx_B_C130_G131	NAN	NANT	0	0.84	OP31
32	1vbx_B_G131_C132	AAA	AA00	46	0.27	AA00
33	1vbx_B_C132_C133	AAA	AA00	58	0.30	AA00
34	1vbx_B_C133_G134	AAA	AA00	66	0.26	AA00
35	1vbx_B_G134_G135	AAA	AA00	76	0.18	AA00
36	1vbx_B_G135_C136	AAA	AA00	81	0.26	AA00
37	1vbx_B_C136_U137	AAA	AA00	35	0.41	AA00
38	1vbx_B_U137_G138	AAu	AA12	90	0.19	AA12
39	1vbx_B_G138_G139	AAA	AA00	87	0.22	AA00
40	1vbx_B_G139_G140	AAA	AA00	95	0.16	AA00
41	1vbx_B_G140_C141	NAN	NANT	0	0.67	BB13
42	1vbx_B_C141_A142	NAN	NANT	0	0.51	OP26
43	1vbx_B_A142_A143	AAA	AA00	92	0.10	AA00
44	1vbx_B_A143_C144	AAA	AA00	85	0.20	AA00
45	1vbx_B_C144_A145	AAA	AA00	92	0.13	AA00
46	1vbx_B_A145_C146	AAA	AA00	97	0.10	AA00
47	1vbx_B_C146_C147	AAA	AA00	96	0.19	AA00
48	1vbx_B_C147_A148	AAA	AA00	84	0.22	AA00
49	1vbx_B_A148_U149	AAA	AA00	93	0.21	AA00
50	1vbx_B_U149_U150	ICL	IC02	89	0.12	IC02
51	1vbx_B_U150_G151	ZZZ	ZZ02	69	0.58	ZZ02
52	1vbx_B_G151_C152	NAN	NANT	0	0.83	IC02
53	1vbx_B_C152_A153	NAN	NANT	0	0.98	AA12
54	1vbx_B_A153_C154	AAA	AA00	60	0.24	AA00
55	1vbx_B_C154_U155	NAN	NANT	0	0.54	OP21
56	1vbx_B_U155_C156	NAN	NANT	0	0.40	OP26
57	1vbx_B_C156_C157	AAA	AA00	36	0.30	AA00
58	1vbx_B_C157_G158	NAN	NANT	0	1.52	OP11
59	1vbx_B_G158_G159	AAA	AA08	79	0.16	AA08
60	1vbx_B_G159_U160	AAA	AA08	85	0.14	AA08
61	1vbx_B_U160_G161	AAA	AA00	91	0.21	AA00
62	1vbx_B_G161_G162	AAA	AA00	32	0.31	AA00
63	1vbx_B_G162_U163	NAN	NANT	0	1.73	AA13
64	1vbx_B_U163_G164	NAN	NANT	0	1.98	OP14
65	1vbx_B_G164_A165	NAN	NANT	0	1.74	OP16
66	1vbx_B_A165_A166	AAA	AA09	49	0.26	AA09
67	1vbx_B_A166_U167	NAN	NANT	0	0.69	IC07
68	1vbx_B_U167_G168	AAw	AA01	15	0.32	AA01
69	1vbx_B_G168_G169	AAA	AA00	88	0.23	AA00
70	1vbx_B_G169_G170	AAA	AA00	52	0.24	AA00
71	1vbx_B_G170_A171	AAA	AA00	90	0.18	AA00
72	1vbx_B_A171_C172	AAw	AA01	52	0.25	AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible