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Conformers: ABBIImiBZICOPNSYNN
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U1A MUTANT/RNA COMPLEX + GLYCEROL

Results of the assignment of 50 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011urn_P_A1_A2AAAAA00490.37 AA00
021urn_P_A2_U3AAAAA00840.10 AA00
031urn_P_U3_C4AAAAA00720.18 AA00
041urn_P_C4_C5AAAAA00650.20 AA00
051urn_P_C5_A6AAAAA00680.27 AA00
061urn_P_A6_U7AAAAA00850.17 AA00
071urn_P_U7_U8ICLIC02830.15 IC02
081urn_P_U8_G9ZZZZZ02570.64 ZZ02
091urn_P_G9_C10NANNANT00.73 IC02
101urn_P_C10_A11NANNANT00.68 OP15
111urn_P_A11_C12AAAAA08770.18 AA08
121urn_P_G16_G17AAAAA08670.34 AA08
131urn_P_G17_A18AAAAA00750.23 AA00
141urn_P_A18_U19AAAAA04820.24 AA04
151urn_P_U19_U20NANNANT00.43 OP06
161urn_Q_A1_A2AAAAA08760.28 AA08
171urn_Q_A2_U3AAAAA00940.12 AA00
181urn_Q_U3_C4AAAAA08840.23 AA08
191urn_Q_C4_C5AAAAA00820.15 AA00
201urn_Q_C5_A6AAAAA00690.23 AA00
211urn_Q_A6_U7AAAAA00890.20 AA00
221urn_Q_U7_U8ICLIC02870.14 IC02
231urn_Q_U8_G9ZZZZZ02460.66 ZZ02
241urn_Q_G9_C10NANNANT00.72 IC02
251urn_Q_C10_A11NANNANT00.68 OP15
261urn_Q_A11_C12AAAAA00750.15 AA00
271urn_Q_C12_U13NANNANT00.65 OP21
281urn_Q_U13_C14NANNANT01.21 OP24
291urn_Q_C14_C15NANNANT00.97 BB02
301urn_Q_C15_G16NANNANT01.54 OP11
311urn_Q_G16_G17AAAAA03700.25 AA03
321urn_Q_G17_A18AAAAA00930.15 AA00
331urn_Q_A18_U19AAAAA00720.20 AA00
341urn_Q_U19_U20AAAAA08610.28 AA08
351urn_Q_U20_U21NANNANT00.71 OP05
361urn_R_A1_A2NANNANT00.85 AB02
371urn_R_A2_U3AAAAA03260.34 AA03
381urn_R_U3_C4AAAAA00770.25 AA00
391urn_R_C4_C5AAAAA04900.23 AA04
401urn_R_C5_A6AAAAA03180.33 AA03
411urn_R_A6_U7AAAAA08770.23 AA08
421urn_R_U7_U8ICLIC02830.16 IC02
431urn_R_U8_G9ZZZZZ02650.61 ZZ02
441urn_R_G9_C10NANNANT00.72 IC02
451urn_R_C10_A11NANNANT00.71 OP15
461urn_R_A11_C12AAAAA08790.20 AA08
471urn_R_G16_G17AAAAA08710.28 AA08
481urn_R_G17_A18AAAAA00890.18 AA00
491urn_R_A18_U19NANNANT00.95 IC03
501urn_R_U19_U20NANNANT00.54 AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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