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Conformers: ABBIImiBZICOPNSYNN
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Structure of aminofluorene adduct paired opposite cytosine at the polymerase active site.

Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011ua1_B_DA6_DG7BBwBB03820.19 BB03
021ua1_B_DG7_DG8BBBBB00670.39 BB00
031ua1_B_DG8_DG9BB2BB07630.26 BB07
041ua1_B_DG9_DA10BBBBB00850.21 BB00
051ua1_B_DA10_DT11BBBBB00920.17 BB00
061ua1_B_DT11_DG12BBBBB00950.10 BB00
071ua1_B_DG12_DG13BBBBB00840.23 BB00
081ua1_B_DG13_DT14B-ABA13730.25 BA13
091ua1_B_DT14_DG15AAAAA00890.19 AA00
101ua1_B_DG15_DC16A-BAB05360.17 AB05
111ua1_C_DT26_DG27NANNANT00.48 OP10
121ua1_C_DG27_DC28NANNANT00.70 AA08
131ua1_C_DC28_DA29AAwAA01930.12 AA01
141ua1_C_DA29_DC30A-BAB05760.27 AB05
151ua1_C_DC30_DC31BBBBB00920.17 BB00
161ua1_C_DC31_DA32B-ABA08790.23 BA08
171ua1_C_DA32_DT33A-BAB01770.23 AB01
181ua1_C_DT33_DC34BBBBB00960.10 BB00
191ua1_C_DC34_DC35BBBBB00890.27 BB00
201ua1_C_DC35_DC36B12BB04800.32 BB04
211ua1_C_DC36_DT37BBBBB00890.20 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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