Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Aminofluorene DNA adduct at the pre-insertion site of a DNA polymerase
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 19 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1ua0_B_DG21_DG22 | B-A | BA01 | 58 | 0.29 |
| 02 | 1ua0_B_DG22_DG23 | A-B | AB01 | 86 | 0.24 |
| 03 | 1ua0_B_DG23_DA24 | BBB | BB00 | 89 | 0.18 |
| 04 | 1ua0_B_DA24_DT25 | B-A | BA01 | 89 | 0.21 |
| 05 | 1ua0_B_DT25_DG26 | A-B | AB01 | 86 | 0.34 |
| 06 | 1ua0_B_DG26_DG27 | B-A | BA08 | 79 | 0.29 |
| 07 | 1ua0_B_DG27_DT28 | AAA | AA00 | 81 | 0.23 |
| 08 | 1ua0_B_DT28_DG29 | A-B | AB05 | 81 | 0.22 |
| 09 | 1ua0_C_DT2_DG3 | NAN | NANT | 0 | 0.87 |
| 10 | 1ua0_C_DG3_DC4 | NAN | NANT | 0 | 0.94 |
| 11 | 1ua0_C_DC4_DA5 | AAA | AA00 | 79 | 0.25 |
| 12 | 1ua0_C_DA5_DC6 | AAw | AA01 | 93 | 0.16 |
| 13 | 1ua0_C_DC6_DC7 | A-B | AB05 | 81 | 0.25 |
| 14 | 1ua0_C_DC7_DA8 | BBB | BB00 | 65 | 0.32 |
| 15 | 1ua0_C_DA8_DT9 | BBB | BB00 | 90 | 0.21 |
| 16 | 1ua0_C_DT9_DC10 | B-A | BA01 | 56 | 0.20 |
| 17 | 1ua0_C_DC10_DC11 | NAN | NANT | 0 | 0.47 |
| 18 | 1ua0_C_DC11_DC12 | BBB | BB00 | 62 | 0.46 |
| 19 | 1ua0_C_DC12_DT13 | B12 | BB04 | 90 | 0.22 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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