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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of the bipartite DNA-binding domain of Tc3 transposase bound to transposon DNA

Results of the assignment of 50 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011u78_B_DG3_DG4AAAAA00800.16 AA00
021u78_B_DG4_DG5AAAAA08940.13 AA08
031u78_B_DG5_DG6AAAAA00330.21 AA00
041u78_B_DG6_DG7NANNANT00.41 AA03
051u78_B_DG7_DT8A-BAB05410.35 AB05
061u78_B_DT8_DC9BBBBB00480.18 BB00
071u78_B_DC9_DC10NANNANT00.50 BB00
081u78_B_DC10_DT11BBwBB17580.28 BB17
091u78_B_DT11_DA12BB2BB07460.30 BB07
101u78_B_DA12_DT13BBBBB00720.26 BB00
111u78_B_DT13_DA14B12BB04310.45 BB04
121u78_B_DA14_DG15B-ABA05190.44 BA05
131u78_B_DG15_DA16B-ABA08470.28 BA08
141u78_B_DA16_DA17NANNANT00.32 AB03
151u78_B_DA17_DC18BBwBB02580.22 BB02
161u78_B_DC18_DT19BBBBB00400.33 BB00
171u78_B_DT19_DT20BBBBB01330.15 BB01
181u78_B_DT20_DT21BBBBB01380.19 BB01
191u78_B_DT21_DC22BBBBB00860.20 BB00
201u78_B_DC22_DC23B-ABA13450.28 BA13
211u78_B_DC23_DC24NANNANT00.39 AA00
221u78_B_DC24_DA25A-BAB01390.24 AB01
231u78_B_DA25_DC26NANNANT00.39 BB03
241u78_B_DC26_DA27A-BAB03620.41 AB03
251u78_B_DA27_DC28B-ABA13360.34 BA13
261u78_C_DT29_DG30AAAAA00430.27 AA00
271u78_C_DG30_DT31AAAAA08470.28 AA08
281u78_C_DT31_DG32NANNANT00.56 BB10
291u78_C_DG32_DG33NANNANT00.69 BB16
301u78_C_DG33_DG34miBBB10810.35 BB10
311u78_C_DG34_DA35miBBB10490.38 BB10
321u78_C_DA35_DA36BBBBB00820.17 BB00
331u78_C_DA36_DA37BBBBB00380.20 BB00
341u78_C_DA37_DG38BBBBB00870.22 BB00
351u78_C_DG38_DT39BBBBB01740.12 BB01
361u78_C_DT39_DT40BBBBB00720.20 BB00
371u78_C_DT40_DC41B-ABA16700.29 BA16
381u78_C_DC41_DT42A-BAB05100.29 AB05
391u78_C_DT42_DA43B12BB0470.41 BB04
401u78_C_DA43_DT44miBBB10370.50 BB10
411u78_C_DT44_DA45B12BB04390.44 BB04
421u78_C_DA45_DG46BBBBB00860.20 BB00
431u78_C_DG46_DG47NANNANT00.66 BA08
441u78_C_DG47_DA48NANNANT00.36 BA08
451u78_C_DA48_DC49NANNANT00.29 BB10
461u78_C_DC49_DC50NANNANT00.45 AA01
471u78_C_DC50_DC51AAAAA08820.13 AA08
481u78_C_DC51_DC52A-BAB05800.23 AB05
491u78_C_DC52_DC53BBBBB00460.27 BB00
501u78_C_DC53_DG54BBBBB00670.32 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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