Conformers:
ABBIImiBZICOPNSYNN
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Extension of an adenine-8oxoguanine mismatch
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1u4b_B_DT20_DG21 | BBB | BB00 | 72 | 0.32 |
| 02 | 1u4b_B_DG21_DA22 | B12 | BB04 | 90 | 0.27 |
| 03 | 1u4b_B_DA22_DC23 | BBw | BB02 | 91 | 0.15 |
| 04 | 1u4b_B_DC23_DT24 | BBB | BB00 | 91 | 0.19 |
| 05 | 1u4b_B_DT24_DC25 | B-A | BA01 | 78 | 0.19 |
| 06 | 1u4b_B_DC25_DG26 | A-B | AB01 | 81 | 0.33 |
| 07 | 1u4b_B_DG26_DA27 | B-A | BA08 | 82 | 0.24 |
| 08 | 1u4b_B_DA27_DT28 | AAA | AA00 | 76 | 0.22 |
| 09 | 1u4b_B_DT28_DA29 | A-B | AB01 | 78 | 0.19 |
| 10 | 1u4b_C_DC3_DT4 | NAN | NANT | 0 | 0.75 |
| 11 | 1u4b_C_DT4_DA5 | AAA | AA00 | 88 | 0.20 |
| 12 | 1u4b_C_DA5_8OG6 | NAN | NANT | 0 | 0.99 |
| 13 | 1u4b_C_8OG6_DC7 | NAN | NANT | 0 | 0.46 |
| 14 | 1u4b_C_DC7_DG8 | BBB | BB00 | 88 | 0.22 |
| 15 | 1u4b_C_DG8_DA9 | BB2 | BB07 | 69 | 0.31 |
| 16 | 1u4b_C_DA9_DG10 | B-A | BA01 | 66 | 0.26 |
| 17 | 1u4b_C_DG10_DT11 | A-B | AB01 | 81 | 0.31 |
| 18 | 1u4b_C_DT11_DC12 | B-A | BA01 | 61 | 0.27 |
| 19 | 1u4b_C_DC12_DA13 | A-B | AB01 | 82 | 0.24 |
| 20 | 1u4b_C_DA13_DG14 | B12 | BB04 | 54 | 0.42 |
| 21 | 1u4b_C_DG14_DG15 | B-A | BA01 | 42 | 0.32 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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