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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the nucleosome core particle containing the histone domain of macroH2A

Results of the assignment of 288 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011u35_I_DA1_DT2BBBBB00320.33 BB00
0021u35_I_DT2_DC3BBBBB00720.25 BB00
0031u35_I_DC3_DA4B12BB04690.27 BB04
0041u35_I_DA4_DA5BBBBB00870.22 BB00
0051u35_I_DA5_DT6BBwBB02760.18 BB02
0061u35_I_DT6_DA7B12BB04360.31 BB04
0071u35_I_DA7_DT8BBBBB00860.20 BB00
0081u35_I_DT8_DC9BBBBB00780.20 BB00
0091u35_I_DC9_DC10BBBBB00490.24 BB00
0101u35_I_DC10_DA11B12BB04680.35 BB04
0111u35_I_DA11_DC12BBBBB00470.41 BB00
0121u35_I_DC12_DC13BBBBB00870.20 BB00
0131u35_I_DC13_DT14BBBBB00620.32 BB00
0141u35_I_DT14_DG15BB2BB07720.32 BB07
0151u35_I_DG15_DC16BBBBB00840.18 BB00
0161u35_I_DC16_DA17BB2BB07560.36 BB07
0171u35_I_DA17_DG18BBBBB00550.31 BB00
0181u35_I_DG18_DA19B12BB04770.22 BB04
0191u35_I_DA19_DT20BBBBB00910.22 BB00
0201u35_I_DT20_DT21miBBB13860.16 BB13
0211u35_I_DT21_DC22BBwBB02550.42 BB02
0221u35_I_DC22_DT23BBwBB03620.31 BB03
0231u35_I_DT23_DA24NANNANT00.54 BB11
0241u35_I_DA24_DC25NANNANT00.54 BB11
0251u35_I_DC25_DC26BBwBB16300.62 BB16
0261u35_I_DC26_DA27BB2BB08420.51 BB08
0271u35_I_DA27_DA28BBBBB00590.34 BB00
0281u35_I_DA28_DA29BB2BB08680.35 BB08
0291u35_I_DA29_DA30BBBBB00470.34 BB00
0301u35_I_DA30_DG31NANNANT00.30 BB11
0311u35_I_DG31_DT32NANNANT00.55 BB02
0321u35_I_DT32_DG33BBBBB00850.19 BB00
0331u35_I_DG33_DT34miBBB13820.23 BB13
0341u35_I_DT34_DA35BBBBB00210.46 BB00
0351u35_I_DA35_DT36BBBBB00490.42 BB00
0361u35_I_DT36_DT37BBBBB00790.32 BB00
0371u35_I_DT37_DT38B12BB05600.34 BB05
0381u35_I_DT38_DG39BBwBB16750.19 BB16
0391u35_I_DG39_DG40NANNANT00.74 BB10
0401u35_I_DG40_DA41BBBBB00680.24 BB00
0411u35_I_DA41_DA42BBBBB00740.29 BB00
0421u35_I_DA42_DA43BBBBB00110.41 BB00
0431u35_I_DA43_DC44BBBBB00640.28 BB00
0441u35_I_DC44_DT45B12BB04820.23 BB04
0451u35_I_DT45_DG46BBBBB00850.22 BB00
0461u35_I_DG46_DC47BB2BB07550.43 BB07
0471u35_I_DC47_DT48BBwBB03860.23 BB03
0481u35_I_DT48_DC49BB2BB07580.36 BB07
0491u35_I_DC49_DC50BBBBB00800.19 BB00
0501u35_I_DC50_DA51BBBBB00500.41 BB00
0511u35_I_DA51_DT52BBBBB00450.41 BB00
0521u35_I_DT52_DC53BBBBB00830.19 BB00
0531u35_I_DC53_DA54BBBBB00610.29 BB00
0541u35_I_DA54_DA55B12BB05710.28 BB05
0551u35_I_DA55_DA56NANNANT00.83 BB08
0561u35_I_DA56_DA57BBBBB00470.36 BB00
0571u35_I_DA57_DG58BBBBB00320.48 BB00
0581u35_I_DG58_DG59miBBB13650.26 BB13
0591u35_I_DG59_DC60BBwBB16660.46 BB16
0601u35_I_DC60_DA61B12BB04820.18 BB04
0611u35_I_DA61_DT62BBBBB00790.26 BB00
0621u35_I_DT62_DG63miBBB10650.25 BB10
0631u35_I_DG63_DT64B12BB04770.17 BB04
0641u35_I_DT64_DT65BBBBB00910.21 BB00
0651u35_I_DT65_DC66BBBBB00910.13 BB00
0661u35_I_DC66_DA67BB2BB07800.27 BB07
0671u35_I_DA67_DG68BBBBB00670.24 BB00
0681u35_I_DG68_DC69BB2BB07610.25 BB07
0691u35_I_DC69_DG70B12BB04810.27 BB04
0701u35_I_DG70_DG71BBBBB00850.12 BB00
0711u35_I_DG71_DA72B12BB04580.17 BB04
0721u35_I_DA72_DA73BBBBB00730.17 BB00
0731u35_I_DA73_DT74BBBBB00700.27 BB00
0741u35_I_DT74_DC75BBBBB00870.17 BB00
0751u35_I_DC75_DC76BBBBB00610.38 BB00
0761u35_I_DC76_DG77BB2BB07480.19 BB07
0771u35_I_DG77_DC78B12BB04630.34 BB04
0781u35_I_DC78_DT79BB2BB07510.26 BB07
0791u35_I_DT79_DG80BBwBB11490.47 BB11
0801u35_I_DG80_DA81BBBBB00410.45 BB00
0811u35_I_DA81_DA82BBBBB00920.15 BB00
0821u35_I_DA82_DC83BBBBB00710.20 BB00
0831u35_I_DC83_DA84B12BB04650.24 BB04
0841u35_I_DA84_DT85BBBBB00870.23 BB00
0851u35_I_DT85_DG86BBBBB00910.22 BB00
0861u35_I_DG86_DC87BBBBB00950.14 BB00
0871u35_I_DC87_DC88BB2BB07630.35 BB07
0881u35_I_DC88_DT89B12BB04680.41 BB04
0891u35_I_DT89_DT90BB2BB07600.25 BB07
0901u35_I_DT90_DT91BBBBB00810.15 BB00
0911u35_I_DT91_DT92BBBBB00380.19 BB00
0921u35_I_DT92_DG93BBBBB00670.15 BB00
0931u35_I_DG93_DA94B12BB04810.19 BB04
0941u35_I_DA94_DT95NANNANT00.47 BB17
0951u35_I_DT95_DG96BBBBB00660.28 BB00
0961u35_I_DG96_DG97BBBBB00550.33 BB00
0971u35_I_DG97_DA98B12BB04620.26 BB04
0981u35_I_DA98_DG99BB2BB07810.22 BB07
0991u35_I_DG99_DC100BBBBB00840.20 BB00
1001u35_I_DC100_DA101BB2BB07900.24 BB07
1011u35_I_DA101_DG102BBBBB00930.15 BB00
1021u35_I_DG102_DT103BBBBB00830.26 BB00
1031u35_I_DT103_DT104BBBBB00970.13 BB00
1041u35_I_DT104_DT105BBBBB00740.28 BB00
1051u35_I_DT105_DC106BBBBB00940.16 BB00
1061u35_I_DC106_DC107BB2BB07610.34 BB07
1071u35_I_DC107_DA108BBBBB00200.44 BB00
1081u35_I_DA108_DA109NANNANT00.42 BB07
1091u35_I_DA109_DA110B12BB04790.16 BB04
1101u35_I_DA110_DT111BBBBB00860.26 BB00
1111u35_I_DT111_DA112BBBBB00620.33 BB00
1121u35_I_DA112_DC113miBBB13600.34 BB13
1131u35_I_DC113_DA114NANNANT00.38 BB16
1141u35_I_DA114_DC115BBBBB00620.32 BB00
1151u35_I_DC115_DT116B12BB04850.25 BB04
1161u35_I_DT116_DT117B12BB04740.26 BB04
1171u35_I_DT117_DT118BBBBB00480.37 BB00
1181u35_I_DT118_DT119BBwBB03500.32 BB03
1191u35_I_DT119_DG120BB2BB07390.30 BB07
1201u35_I_DG120_DG121BBBBB00790.20 BB00
1211u35_I_DG121_DT122BBBBB00680.26 BB00
1221u35_I_DT122_DA123BBBBB00950.23 BB00
1231u35_I_DA123_DG124BBBBB00700.29 BB00
1241u35_I_DG124_DA125BBBBB00770.26 BB00
1251u35_I_DA125_DA126BBBBB00870.18 BB00
1261u35_I_DA126_DT127BBBBB00880.20 BB00
1271u35_I_DT127_DC128BBBBB00600.36 BB00
1281u35_I_DC128_DT129BBBBB00820.27 BB00
1291u35_I_DT129_DG130BB2BB07720.33 BB07
1301u35_I_DG130_DC131BBBBB00600.20 BB00
1311u35_I_DC131_DA132B12BB04260.45 BB04
1321u35_I_DA132_DG133NANNANT00.47 BB02
1331u35_I_DG133_DG134BBBBB00130.48 BB00
1341u35_I_DG134_DT135BBBBB00810.27 BB00
1351u35_I_DT135_DG136BBBBB00840.24 BB00
1361u35_I_DG136_DG137BB2BB07610.24 BB07
1371u35_I_DG137_DA138BBBBB00660.37 BB00
1381u35_I_DA138_DT139BBBBB00860.28 BB00
1391u35_I_DT139_DA140BBBBB00760.30 BB00
1401u35_I_DA140_DT141BBBBB00910.19 BB00
1411u35_I_DT141_DT142BBBBB00920.13 BB00
1421u35_I_DT142_DG143BBBBB00910.14 BB00
1431u35_I_DG143_DA144B12BB04880.17 BB04
1441u35_I_DA144_DT145BBBBB00760.18 BB00
1451u35_J_DA146_DT147BBBBB00440.25 BB00
1461u35_J_DT147_DC148miBBB13630.46 BB13
1471u35_J_DC148_DA149NANNANT00.90 AB02
1481u35_J_DA149_DA150BB2BB07880.15 BB07
1491u35_J_DA150_DT151BBwBB02850.13 BB02
1501u35_J_DT151_DA152BBBBB00700.34 BB00
1511u35_J_DA152_DT153BBBBB00920.11 BB00
1521u35_J_DT153_DC154B12BB04780.20 BB04
1531u35_J_DC154_DC155BBBBB00680.28 BB00
1541u35_J_DC155_DA156miBBB10730.39 BB10
1551u35_J_DA156_DC157BBBBB00790.21 BB00
1561u35_J_DC157_DC158BBBBB00630.35 BB00
1571u35_J_DC158_DT159BBBBB00840.18 BB00
1581u35_J_DT159_DG160BB2BB07560.37 BB07
1591u35_J_DG160_DC161BBBBB00340.30 BB00
1601u35_J_DC161_DA162BB2BB07530.40 BB07
1611u35_J_DA162_DG163BBBBB00530.25 BB00
1621u35_J_DG163_DA164B12BB04910.13 BB04
1631u35_J_DA164_DT165BBBBB00890.16 BB00
1641u35_J_DT165_DT166BBBBB00740.19 BB00
1651u35_J_DT166_DC167BBBBB00860.27 BB00
1661u35_J_DC167_DT168B12BB04850.24 BB04
1671u35_J_DT168_DA169miBBB13920.22 BB13
1681u35_J_DA169_DC170NANNANT00.63 BB11
1691u35_J_DC170_DC171NANNANT00.69 BB16
1701u35_J_DC171_DA172BB2BB07740.34 BB07
1711u35_J_DA172_DA173BBBBB00720.22 BB00
1721u35_J_DA173_DA174B12BB04810.24 BB04
1731u35_J_DA174_DA175BBBBB00880.16 BB00
1741u35_J_DA175_DG176BBBBB00760.24 BB00
1751u35_J_DG176_DT177BBBBB00510.42 BB00
1761u35_J_DT177_DG178BBBBB00690.29 BB00
1771u35_J_DG178_DT179BBBBB00810.20 BB00
1781u35_J_DT179_DA180BBBBB00700.27 BB00
1791u35_J_DA180_DT181BBBBB00810.29 BB00
1801u35_J_DT181_DT182BBBBB00670.41 BB00
1811u35_J_DT182_DT183BBBBB00760.18 BB00
1821u35_J_DT183_DG184B12BB04430.48 BB04
1831u35_J_DG184_DG185BB2BB07620.32 BB07
1841u35_J_DG185_DA186BBBBB00440.30 BB00
1851u35_J_DA186_DA187BBBBB00790.19 BB00
1861u35_J_DA187_DA188B12BB04900.15 BB04
1871u35_J_DA188_DC189BBBBB00250.42 BB00
1881u35_J_DC189_DT190BBBBB00710.31 BB00
1891u35_J_DT190_DG191BBBBB00690.33 BB00
1901u35_J_DG191_DC192BB2BB07400.25 BB07
1911u35_J_DC192_DT193BBBBB00700.22 BB00
1921u35_J_DT193_DC194BB2BB07780.18 BB07
1931u35_J_DC194_DC195BBBBB00860.23 BB00
1941u35_J_DC195_DA196BBBBB00860.13 BB00
1951u35_J_DA196_DT197BBwBB02640.32 BB02
1961u35_J_DT197_DC198BBBBB00660.25 BB00
1971u35_J_DC198_DA199B12BB04800.29 BB04
1981u35_J_DA199_DA200BBBBB00780.26 BB00
1991u35_J_DA200_DA201BBBBB00470.31 BB00
2001u35_J_DA201_DA202BB2BB07580.23 BB07
2011u35_J_DA202_DG203BB2BB07370.18 BB07
2021u35_J_DG203_DG204BBBBB00750.20 BB00
2031u35_J_DG204_DC205B12BB04820.17 BB04
2041u35_J_DC205_DA206BBBBB00810.18 BB00
2051u35_J_DA206_DT207BBBBB00520.25 BB00
2061u35_J_DT207_DG208BBBBB00880.23 BB00
2071u35_J_DG208_DT209BBBBB00380.24 BB00
2081u35_J_DT209_DT210BBBBB00900.17 BB00
2091u35_J_DT210_DC211BBBBB00880.13 BB00
2101u35_J_DC211_DA212BB2BB07670.19 BB07
2111u35_J_DA212_DG213BBBBB00690.26 BB00
2121u35_J_DG213_DC214BB2BB07790.18 BB07
2131u35_J_DC214_DG215BBBBB00760.25 BB00
2141u35_J_DG215_DG216BBBBB00830.18 BB00
2151u35_J_DG216_DA217miBBB10580.40 BB10
2161u35_J_DA217_DT218BBBBB00910.19 BB00
2171u35_J_DT218_DT219B12BB04730.20 BB04
2181u35_J_DT219_DC220BBBBB00830.25 BB00
2191u35_J_DC220_DC221B12BB04890.20 BB04
2201u35_J_DC221_DG222BB2BB07590.17 BB07
2211u35_J_DG222_DC223BBBBB00970.05 BB00
2221u35_J_DC223_DT224BB2BB07440.38 BB07
2231u35_J_DT224_DG225BBwBB11370.46 BB11
2241u35_J_DG225_DA226BBBBB00480.43 BB00
2251u35_J_DA226_DA227BBBBB00860.16 BB00
2261u35_J_DA227_DC228BBBBB00830.20 BB00
2271u35_J_DC228_DA229B12BB04800.17 BB04
2281u35_J_DA229_DT230BBBBB00360.37 BB00
2291u35_J_DT230_DG231B12BB04900.19 BB04
2301u35_J_DG231_DC232BBBBB00940.20 BB00
2311u35_J_DC232_DC233BB2BB07570.37 BB07
2321u35_J_DC233_DT234BBBBB00260.33 BB00
2331u35_J_DT234_DT235BB2BB07510.23 BB07
2341u35_J_DT235_DT236BBBBB00810.28 BB00
2351u35_J_DT236_DT237BBBBB00860.18 BB00
2361u35_J_DT237_DG238BBBBB00680.30 BB00
2371u35_J_DG238_DA239BBBBB00530.39 BB00
2381u35_J_DA239_DT240BBwBB17420.30 BB17
2391u35_J_DT240_DG241NANNANT00.62 BB11
2401u35_J_DG241_DG242NANNANT00.82 BB07
2411u35_J_DG242_DA243B12BB04230.37 BB04
2421u35_J_DA243_DG244BB2BB07610.22 BB07
2431u35_J_DG244_DC245BBBBB00700.37 BB00
2441u35_J_DC245_DA246NANNANT00.62 BB11
2451u35_J_DA246_DG247BBwBB16710.36 BB16
2461u35_J_DG247_DT248NANNANT00.62 BB17
2471u35_J_DT248_DT249BBBBB00580.40 BB00
2481u35_J_DT249_DT250BBBBB00890.24 BB00
2491u35_J_DT250_DC251BBBBB00710.27 BB00
2501u35_J_DC251_DC252BBBBB00930.22 BB00
2511u35_J_DC252_DA253BB2BB07870.36 BB07
2521u35_J_DA253_DA254BBBBB00580.29 BB00
2531u35_J_DA254_DA255BBBBB00790.21 BB00
2541u35_J_DA255_DT256BBwBB11780.34 BB11
2551u35_J_DT256_DA257BBBBB00720.30 BB00
2561u35_J_DA257_DC258BBBBB00490.35 BB00
2571u35_J_DC258_DA259BBBBB00840.19 BB00
2581u35_J_DA259_DC260BBwBB02610.31 BB02
2591u35_J_DC260_DT261BBBBB00760.23 BB00
2601u35_J_DT261_DT262BBBBB00710.31 BB00
2611u35_J_DT262_DT263BBBBB00920.12 BB00
2621u35_J_DT263_DT264BBBBB00740.24 BB00
2631u35_J_DT264_DG265BB2BB07430.41 BB07
2641u35_J_DG265_DG266BBwBB03390.51 BB03
2651u35_J_DG266_DT267BBBBB00780.26 BB00
2661u35_J_DT267_DA268BBBBB00740.35 BB00
2671u35_J_DA268_DG269BBBBB00820.15 BB00
2681u35_J_DG269_DA270BBBBB00640.27 BB00
2691u35_J_DA270_DA271B12BB04720.20 BB04
2701u35_J_DA271_DT272BBBBB00900.20 BB00
2711u35_J_DT272_DC273BBBBB00660.27 BB00
2721u35_J_DC273_DT274B12BB04460.30 BB04
2731u35_J_DT274_DG275BB2BB07780.28 BB07
2741u35_J_DG275_DC276BBBBB00650.25 BB00
2751u35_J_DC276_DA277BB2BB07870.28 BB07
2761u35_J_DA277_DG278BBBBB00650.22 BB00
2771u35_J_DG278_DG279B12BB04710.18 BB04
2781u35_J_DG279_DT280NANNANT00.43 BB17
2791u35_J_DT280_DG281BBBBB00430.25 BB00
2801u35_J_DG281_DG282BBBBB00830.16 BB00
2811u35_J_DG282_DA283B12BB04640.18 BB04
2821u35_J_DA283_DT284BBBBB00590.34 BB00
2831u35_J_DT284_DA285BBBBB00810.24 BB00
2841u35_J_DA285_DT286BBBBB00500.26 BB00
2851u35_J_DT286_DT287BBwBB02720.15 BB02
2861u35_J_DT287_DG288BBBBB00760.18 BB00
2871u35_J_DG288_DA289B12BB04740.22 BB04
2881u35_J_DA289_DT290BBBBB00880.11 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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