Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of a complex between WT bacteriophage MS2 coat protein and an F5 aptamer RNA stemloop with 2aminopurine substituted at the-10 position
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1u1y_R_C1_C2 | AAA | AA00 | 90 | 0.15 |
| 02 | 1u1y_R_C2_G3 | AAA | AA00 | 70 | 0.23 |
| 03 | 1u1y_R_G3_G4 | AAA | AA00 | 69 | 0.27 |
| 04 | 1u1y_R_G4_2PR5 | NAN | NANT | 0 | 0.86 |
| 05 | 1u1y_R_2PR5_G6 | NAN | NANT | 0 | 0.83 |
| 06 | 1u1y_R_G6_G7 | AAA | AA00 | 52 | 0.22 |
| 07 | 1u1y_R_G7_A8 | AAA | AA00 | 68 | 0.24 |
| 08 | 1u1y_R_A8_U9 | OPN | OP09 | 57 | 0.28 |
| 09 | 1u1y_R_U9_C10 | OPN | OP20 | 35 | 0.45 |
| 10 | 1u1y_R_C10_A11 | NAN | NANT | 0 | 0.53 |
| 11 | 1u1y_R_A11_C12 | NAN | NANT | 0 | 0.61 |
| 12 | 1u1y_R_C12_C13 | AAA | AA00 | 84 | 0.20 |
| 13 | 1u1y_R_C13_A14 | AAA | AA00 | 97 | 0.12 |
| 14 | 1u1y_R_A14_C15 | AAA | AA00 | 90 | 0.15 |
| 15 | 1u1y_R_C15_G16 | AAA | AA00 | 95 | 0.12 |
| 16 | 1u1y_S_C102_G103 | NAN | NANT | 0 | 0.54 |
| 17 | 1u1y_S_G103_G104 | AAA | AA00 | 73 | 0.20 |
| 18 | 1u1y_S_G104_2PR105 | NAN | NANT | 0 | 0.91 |
| 19 | 1u1y_S_2PR105_G106 | NAN | NANT | 0 | 0.79 |
| 20 | 1u1y_S_G106_G107 | AAA | AA08 | 33 | 0.38 |
| 21 | 1u1y_S_G107_A108 | AAA | AA00 | 85 | 0.22 |
| 22 | 1u1y_S_A108_U109 | NAN | NANT | 0 | 0.82 |
| 23 | 1u1y_S_U109_C110 | NAN | NANT | 0 | 0.57 |
| 24 | 1u1y_S_C110_A111 | NAN | NANT | 0 | 0.51 |
| 25 | 1u1y_S_A111_C112 | NAN | NANT | 0 | 0.66 |
| 26 | 1u1y_S_C112_C113 | AAA | AA00 | 79 | 0.21 |
| 27 | 1u1y_S_C113_A114 | AAA | AA00 | 56 | 0.26 |
| 28 | 1u1y_S_A114_C115 | NAN | NANT | 0 | 0.72 |
| 29 | 1u1y_S_C115_G116 | NAN | NANT | 0 | 0.69 |
| 30 | 1u1y_S_G116_G117 | AAw | AA01 | 62 | 0.29 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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