Conformers:
ABBIImiBZICOPNSYNN
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Crystal Structure of UP1 Complexed With d(TTAGGGTTA 7GU GG); A Human Telomeric Repeat Containing 7-deaza-guanine
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 10 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1u1m_B_DT202_DA203 | NAN | NANT | 0 | 0.99 |
| 02 | 1u1m_B_DA203_DG204 | NAN | NANT | 0 | 1.44 |
| 03 | 1u1m_B_DG204_DG205 | NAN | NANT | 0 | 1.16 |
| 04 | 1u1m_B_DG205_DG206 | NAN | NANT | 0 | 0.64 |
| 05 | 1u1m_B_DG206_DT207 | NAN | NANT | 0 | 1.08 |
| 06 | 1u1m_B_DT207_DT208 | OPN | OP22 | 35 | 0.81 |
| 07 | 1u1m_B_DT208_DA209 | NAN | NANT | 0 | 1.01 |
| 08 | 1u1m_B_DA209_7GU210 | NAN | NANT | 0 | 1.44 |
| 09 | 1u1m_B_7GU210_DG211 | SYN | BBS1 | 21 | 0.20 |
| 10 | 1u1m_B_DG211_DG212 | BBw | BB11 | 53 | 0.55 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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