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Conformers: ABBIImiBZICOPNSYNN
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HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA CONTAINING A MISMATCHED TEMPLATE ADENINE AND INCOMING CYTIDINE

Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011tv9_T_DC1_DC2BBBBB00670.41 BB00
021tv9_T_DC2_DG3BB2BB07840.24 BB07
031tv9_T_DG3_DA4BBBBB00960.15 BB00
041tv9_T_DA4_DC5BBBBB01460.35 BB01
051tv9_T_DC5_DA6NANNANT01.32 OP21
061tv9_T_DA6_DG7BBBBB00670.30 BB00
071tv9_T_DG7_DC8B12BB04760.19 BB04
081tv9_T_DC8_DG9B12BB04650.30 BB04
091tv9_T_DG9_DC10BBBBB00910.16 BB00
101tv9_T_DC10_DA11BBBBB00930.17 BB00
111tv9_T_DA11_DT12BBBBB00820.19 BB00
121tv9_T_DT12_DC13BBBBB00600.33 BB00
131tv9_T_DC13_DA14BBBBB00860.21 BB00
141tv9_T_DA14_DG15BBBBB00880.19 BB00
151tv9_T_DG15_DC16B12BB04890.18 BB04
161tv9_P_DG1_DC2NANNANT00.61 BB16
171tv9_P_DC2_DT3BBBBB00590.33 BB00
181tv9_P_DT3_DG4BBBBB00940.13 BB00
191tv9_P_DG4_DA5BBBBB00850.28 BB00
201tv9_P_DA5_DT6BBBBB00870.17 BB00
211tv9_P_DT6_DG7BBBBB00890.20 BB00
221tv9_P_DG7_DC8BBBBB01720.21 BB01
231tv9_P_DC8_DG9BBBBB01710.25 BB01
241tv9_P_DG9_DC10B-ABA10600.27 BA10
251tv9_P_DC10_DC11NANNANT00.30 IC02
261tv9_D_DG1_DT2BBBBB01840.19 BB01
271tv9_D_DT2_DC3BBBBB01920.18 BB01
281tv9_D_DC3_DG4BBBBB00580.24 BB00
291tv9_D_DG4_DG5B12BB04710.27 BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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