Conformers:
ABBIImiBZICOPNSYNN
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P53 CORE DOMAIN IN COMPLEX WITH DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1tsr_E_DT1_DT2 | NAN | NANT | 0 | 0.52 |
| 02 | 1tsr_E_DT2_DT3 | NAN | NANT | 0 | 0.55 |
| 03 | 1tsr_E_DT3_DC4 | NAN | NANT | 0 | 1.17 |
| 04 | 1tsr_E_DC4_DC5 | NAN | NANT | 0 | 0.80 |
| 05 | 1tsr_E_DC5_DT6 | NAN | NANT | 0 | 0.47 |
| 06 | 1tsr_E_DT6_DA7 | NAN | NANT | 0 | 0.69 |
| 07 | 1tsr_E_DA7_DG8 | NAN | NANT | 0 | 0.65 |
| 08 | 1tsr_E_DG8_DA9 | BBB | BB00 | 72 | 0.36 |
| 09 | 1tsr_E_DA9_DC10 | NAN | NANT | 0 | 0.53 |
| 10 | 1tsr_E_DC10_DT11 | BBw | BB16 | 23 | 0.58 |
| 11 | 1tsr_E_DT11_DT12 | B-A | BA05 | 75 | 0.21 |
| 12 | 1tsr_E_DT12_DG13 | BBB | BB00 | 10 | 0.69 |
| 13 | 1tsr_E_DG13_DC14 | BBB | BB00 | 85 | 0.22 |
| 14 | 1tsr_E_DC14_DC15 | B-A | BA17 | 65 | 0.26 |
| 15 | 1tsr_E_DC15_DC16 | NAN | NANT | 0 | 0.63 |
| 16 | 1tsr_E_DC16_DA17 | miB | BB10 | 81 | 0.24 |
| 17 | 1tsr_E_DA17_DA18 | BBB | BB00 | 15 | 0.30 |
| 18 | 1tsr_E_DA18_DT19 | NAN | NANT | 0 | 0.37 |
| 19 | 1tsr_E_DT19_DT20 | B-A | BA08 | 62 | 0.37 |
| 20 | 1tsr_E_DT20_DA21 | NAN | NANT | 0 | 0.55 |
| 21 | 1tsr_F_DA1_DT2 | NAN | NANT | 0 | 0.75 |
| 22 | 1tsr_F_DT2_DA3 | NAN | NANT | 0 | 0.40 |
| 23 | 1tsr_F_DA3_DA4 | NAN | NANT | 0 | 0.44 |
| 24 | 1tsr_F_DA4_DT5 | NAN | NANT | 0 | 0.51 |
| 25 | 1tsr_F_DT5_DT6 | NAN | NANT | 0 | 0.40 |
| 26 | 1tsr_F_DT6_DG7 | A-B | AB02 | 63 | 0.22 |
| 27 | 1tsr_F_DG7_DG8 | NAN | NANT | 0 | 0.53 |
| 28 | 1tsr_F_DG8_DG9 | BBB | BB00 | 51 | 0.37 |
| 29 | 1tsr_F_DG9_DC10 | B12 | BB04 | 63 | 0.24 |
| 30 | 1tsr_F_DC10_DA11 | NAN | NANT | 0 | 0.44 |
| 31 | 1tsr_F_DA11_DA12 | NAN | NANT | 0 | 0.57 |
| 32 | 1tsr_F_DA12_DG13 | B-A | BA01 | 17 | 0.36 |
| 33 | 1tsr_F_DG13_DT14 | NAN | NANT | 0 | 0.49 |
| 34 | 1tsr_F_DT14_DC15 | NAN | NANT | 0 | 0.54 |
| 35 | 1tsr_F_DC15_DT16 | NAN | NANT | 0 | 0.42 |
| 36 | 1tsr_F_DT16_DA17 | NAN | NANT | 0 | 0.70 |
| 37 | 1tsr_F_DA17_DG18 | NAN | NANT | 0 | 0.57 |
| 38 | 1tsr_F_DG18_DG19 | NAN | NANT | 0 | 0.49 |
| 39 | 1tsr_F_DG19_DA20 | NAN | NANT | 0 | 0.60 |
| 40 | 1tsr_F_DA20_DA21 | NAN | NANT | 0 | 1.00 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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