DNATCO v4.1: results

RESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST ANGLES

Results of the assignment of 71 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1tra_A_G1_C2	AAA	AA08	46	0.29	AA08
02	1tra_A_C2_G3	AAA	AA08	13	0.31	AA08
03	1tra_A_G3_G4	NAN	NANT	0	0.34	AA03
04	1tra_A_G4_A5	AAA	AA04	59	0.27	AA04
05	1tra_A_A5_U6	AAA	AA04	56	0.29	AA04
06	1tra_A_U6_U7	NAN	NANT	0	0.29	AB05
07	1tra_A_U7_U8	OPN	OP11	77	0.29	OP11
08	1tra_A_U8_A9	NAN	NANT	0	1.03	IC02
09	1tra_A_A9_2MG10	NAN	NANT	0	1.50	OP12
10	1tra_A_2MG10_C11	AAA	AA08	8	0.44	AA08
11	1tra_A_C11_U12	AAA	AA03	86	0.21	AA03
12	1tra_A_U12_C13	AAw	AA10	10	0.33	AA10
13	1tra_A_C13_A14	AAw	AA10	23	0.47	AA10
14	1tra_A_A14_G15	NAN	NANT	0	0.69	AA08
15	1tra_A_G15_H2U16	NAN	NANT	0	1.22	IC03
16	1tra_A_H2U16_H2U17	NAN	NANT	0	0.71	OP18
17	1tra_A_H2U17_G18	NAN	NANT	0	1.40	OP09
18	1tra_A_G18_G19	NAN	NANT	0	0.50	IC05
19	1tra_A_G19_G20	NAN	NANT	0	0.57	OP11
20	1tra_A_G20_A21	NAN	NANT	0	1.24	IC03
21	1tra_A_A21_G22	NAN	NANT	0	0.79	BA13
22	1tra_A_G22_A23	AAA	AA00	42	0.33	AA00
23	1tra_A_A23_G24	AAA	AA00	81	0.19	AA00
24	1tra_A_G24_C25	AAA	AA00	72	0.24	AA00
25	1tra_A_C25_M2G26	AAA	AA04	73	0.25	AA04
26	1tra_A_M2G26_C27	NAN	NANT	0	0.53	AA04
27	1tra_A_C27_C28	AAA	AA08	88	0.17	AA08
28	1tra_A_C28_A29	AAA	AA00	55	0.21	AA00
29	1tra_A_A29_G30	AAA	AA04	39	0.38	AA04
30	1tra_A_G30_A31	AAA	AA04	31	0.34	AA04
31	1tra_A_A31_OMC32	AAA	AA04	31	0.50	AA04
32	1tra_A_OMC32_U33	NAN	NANT	0	0.45	AA04
33	1tra_A_U33_OMG34	NAN	NANT	0	0.42	OP03
34	1tra_A_OMG34_A35	AAA	AA08	28	0.53	AA08
35	1tra_A_A35_A36	NAN	NANT	0	0.65	AA08
36	1tra_A_A36_YG37	AAA	AA08	15	0.38	AA08
37	1tra_A_YG37_A38	AAA	AA03	69	0.30	AA03
38	1tra_A_5MC40_U41	AAA	AA08	50	0.30	AA08
39	1tra_A_U41_G42	AAA	AA00	71	0.21	AA00
40	1tra_A_G42_G43	AAA	AA00	59	0.36	AA00
41	1tra_A_G43_A44	AAA	AA00	67	0.19	AA00
42	1tra_A_A44_G45	NAN	NANT	0	0.41	AA04
43	1tra_A_G45_7MG46	NAN	NANT	0	0.54	IC03
44	1tra_A_7MG46_U47	NAN	NANT	0	1.12	OP17
45	1tra_A_U47_C48	NAN	NANT	0	1.13	OP17
46	1tra_A_C48_5MC49	NAN	NANT	0	1.61	OP06
47	1tra_A_5MC49_U50	AAA	AA00	35	0.35	AA00
48	1tra_A_U50_G51	AAA	AA00	56	0.22	AA00
49	1tra_A_G51_U52	AAA	AA04	87	0.12	AA04
50	1tra_A_U52_G53	AAA	AA04	74	0.24	AA04
51	1tra_A_G53_5MU54	AAA	AA08	63	0.24	AA08
52	1tra_A_C56_G57	AAA	AA08	50	0.29	AA08
53	1tra_A_G57_1MA58	NAN	NANT	0	0.47	IC02
54	1tra_A_1MA58_U59	NAN	NANT	0	0.47	OP25
55	1tra_A_U59_C60	NAN	NANT	0	0.69	AA04
56	1tra_A_C60_C61	OPN	OP12	66	0.32	OP12
57	1tra_A_C61_A62	AAA	AA04	66	0.27	AA04
58	1tra_A_A62_C63	AAA	AA00	92	0.14	AA00
59	1tra_A_C63_A64	AAA	AA00	87	0.11	AA00
60	1tra_A_A64_G65	AAA	AA04	93	0.18	AA04
61	1tra_A_G65_A66	AAA	AA03	80	0.27	AA03
62	1tra_A_A66_A67	AAA	AA04	79	0.19	AA04
63	1tra_A_A67_U68	AAA	AA03	91	0.13	AA03
64	1tra_A_U68_U69	AAA	AA04	79	0.21	AA04
65	1tra_A_U69_C70	AAA	AA03	77	0.26	AA03
66	1tra_A_C70_G71	AAA	AA04	55	0.24	AA04
67	1tra_A_G71_C72	AAA	AA04	80	0.17	AA04
68	1tra_A_C72_A73	AAA	AA04	49	0.39	AA04
69	1tra_A_A73_C74	AAA	AA04	84	0.26	AA04
70	1tra_A_C74_C75	NAN	NANT	0	0.48	AA08
71	1tra_A_C75_A76	NAN	NANT	0	0.83	OP30

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 71 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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