Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
TATA BINDING PROTEIN (TBP)/DNA COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1tgh_B_DC101_DG102 | NAN | NANT | 0 | 0.59 |
| 02 | 1tgh_B_DG102_DT103 | BBw | BB02 | 28 | 0.37 |
| 03 | 1tgh_B_DT103_DA104 | BBB | BB00 | 41 | 0.53 |
| 04 | 1tgh_B_DA104_DT105 | NAN | NANT | 0 | 0.63 |
| 05 | 1tgh_B_DT105_DA106 | B12 | BB04 | 36 | 0.38 |
| 06 | 1tgh_B_DA106_DT107 | BBB | BB00 | 18 | 0.53 |
| 07 | 1tgh_B_DT107_DA108 | NAN | NANT | 0 | 0.49 |
| 08 | 1tgh_B_DA108_DT109 | NAN | NANT | 0 | 0.48 |
| 09 | 1tgh_B_DT109_DA110 | NAN | NANT | 0 | 0.70 |
| 10 | 1tgh_B_DA110_DC111 | BBB | BB00 | 48 | 0.38 |
| 11 | 1tgh_B_DC111_DG112 | BB2 | BB07 | 80 | 0.28 |
| 12 | 1tgh_C_DC113_DG114 | miB | BB10 | 54 | 0.36 |
| 13 | 1tgh_C_DG114_DT115 | BBB | BB00 | 53 | 0.39 |
| 14 | 1tgh_C_DT115_DA116 | BBw | BB02 | 20 | 0.47 |
| 15 | 1tgh_C_DA116_DT117 | BBB | BB00 | 47 | 0.40 |
| 16 | 1tgh_C_DT117_DA118 | NAN | NANT | 0 | 0.73 |
| 17 | 1tgh_C_DA118_DT119 | NAN | NANT | 0 | 0.54 |
| 18 | 1tgh_C_DT119_DA120 | B12 | BB04 | 38 | 0.41 |
| 19 | 1tgh_C_DA120_DT121 | BBB | BB00 | 28 | 0.39 |
| 20 | 1tgh_C_DT121_DA122 | BBB | BB00 | 37 | 0.41 |
| 21 | 1tgh_C_DA122_DC123 | BBw | BB02 | 59 | 0.31 |
| 22 | 1tgh_C_DC123_DG124 | NAN | NANT | 0 | 0.56 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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