DNATCO v4.1: results

How CCA is added to the 3' end of immature tRNA without the use of an oligonucleotide template

Results of the assignment of 67 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1tfy_E_G1_C2	AAA	AA08	65	0.20	AA08
02	1tfy_E_C2_G3	AAA	AA00	88	0.11	AA00
03	1tfy_E_G3_G4	AAA	AA08	77	0.23	AA08
04	1tfy_E_G4_A5	AAA	AA00	91	0.12	AA00
05	1tfy_E_A5_U6	AAA	AA00	90	0.11	AA00
06	1tfy_E_U6_A7	AAA	AA08	88	0.26	AA08
07	1tfy_E_A7_U8	AAA	AA00	75	0.18	AA00
08	1tfy_E_U8_C9	AAA	AA00	61	0.28	AA00
09	1tfy_E_C9_C10	AAA	AA04	74	0.36	AA04
10	1tfy_E_C10_G11	AAA	AA00	68	0.28	AA00
11	1tfy_E_G11_C12	NAN	NANT	0	0.62	AA04
12	1tfy_E_C12_G13	NAN	NANT	0	0.55	AA05
13	1tfy_H_G61_C62	NAN	NANT	0	0.50	AA02
14	1tfy_H_C62_G63	AAA	AA00	68	0.27	AA00
15	1tfy_H_G63_G64	NAN	NANT	0	0.44	AA10
16	1tfy_H_G64_A65	AAA	AA00	56	0.36	AA00
17	1tfy_H_A65_U66	AAA	AA00	78	0.21	AA00
18	1tfy_H_U66_A67	NAN	NANT	0	0.38	AA06
19	1tfy_H_A67_U68	AAA	AA08	85	0.19	AA08
20	1tfy_H_U68_C69	AAA	AA00	81	0.14	AA00
21	1tfy_H_C69_C70	AAA	AA00	35	0.32	AA00
22	1tfy_H_C70_G71	AAA	AA03	44	0.20	AA03
23	1tfy_H_G71_C72	AAA	AA00	59	0.20	AA00
24	1tfy_H_C72_A73	NAN	NANT	0	0.42	AB04
25	1tfy_H_A73_C74	NAN	NANT	0	0.44	OP12
26	1tfy_F_G1_C2	AAA	AA08	57	0.24	AA08
27	1tfy_F_C2_G3	AAA	AA04	84	0.21	AA04
28	1tfy_F_G3_G4	AAA	AA08	90	0.15	AA08
29	1tfy_F_G4_A5	AAA	AA00	95	0.10	AA00
30	1tfy_F_A5_U6	AAA	AA00	81	0.17	AA00
31	1tfy_F_U6_A7	AAA	AA00	61	0.23	AA00
32	1tfy_F_A7_U8	AAA	AA08	94	0.19	AA08
33	1tfy_F_U8_C9	AAA	AA00	67	0.25	AA00
34	1tfy_F_C9_C10	AAA	AA00	67	0.24	AA00
35	1tfy_F_C10_G11	AAA	AA04	78	0.28	AA04
36	1tfy_F_G11_C12	NAN	NANT	0	0.71	AA06
37	1tfy_F_C12_G13	NAN	NANT	0	0.89	AA08
38	1tfy_I_G61_C62	NAN	NANT	0	0.42	AA04
39	1tfy_I_C62_G63	AAA	AA08	15	0.48	AA08
40	1tfy_I_G63_G64	AAA	AA08	57	0.20	AA08
41	1tfy_I_G64_A65	AAA	AA00	58	0.29	AA00
42	1tfy_I_A65_U66	AAA	AA03	70	0.17	AA03
43	1tfy_I_U66_A67	NAN	NANT	0	0.49	AA10
44	1tfy_I_A67_U68	AAA	AA08	95	0.15	AA08
45	1tfy_I_U68_C69	AAA	AA00	92	0.15	AA00
46	1tfy_I_C69_C70	AAA	AA00	29	0.26	AA00
47	1tfy_I_C70_G71	AAA	AA08	78	0.23	AA08
48	1tfy_I_G71_C72	AAA	AA00	73	0.17	AA00
49	1tfy_I_C72_A73	NAN	NANT	0	0.40	AA04
50	1tfy_I_A73_C74	NAN	NANT	0	0.41	OP12
51	1tfy_G_C3_G4	NAN	NANT	0	1.47	OPS1
52	1tfy_G_G4_G5	AAA	AA00	63	0.45	AA00
53	1tfy_G_G5_A6	AAA	AA00	56	0.22	AA00
54	1tfy_G_A6_U7	AAw	AA06	36	0.32	AA06
55	1tfy_G_U7_C8	AAA	AA04	80	0.27	AA04
56	1tfy_G_C8_C9	NAN	NANT	0	0.28	AA03
57	1tfy_G_C9_G10	NAN	NANT	0	0.40	AA06
58	1tfy_G_G10_C11	AAA	AA00	78	0.19	AA00
59	1tfy_G_C11_A12	AAA	AA00	61	0.26	AA00
60	1tfy_G_A12_C13	AAw	AA10	35	0.53	AA10
61	1tfy_J_C61_G62	AAA	AA08	57	0.23	AA08
62	1tfy_J_G62_C63	AAA	AA00	70	0.21	AA00
63	1tfy_J_C63_G64	AAA	AA00	78	0.18	AA00
64	1tfy_J_G64_G65	AAA	AA00	96	0.11	AA00
65	1tfy_J_G65_A66	AAA	AA00	54	0.19	AA00
66	1tfy_J_A66_U67	AAA	AA00	62	0.28	AA00
67	1tfy_J_U67_C68	NAN	NANT	0	0.61	AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 67 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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