Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
TAQ POLYMERASE (E.C.2.7.7.7)/DNA/B-OCTYLGLUCOSIDE COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1tau_T_DG901_DC902 | NAN | NANT | 0 | 0.44 |
| 02 | 1tau_T_DC902_DG903 | NAN | NANT | 0 | 0.65 |
| 03 | 1tau_T_DG903_DA904 | NAN | NANT | 0 | 0.79 |
| 04 | 1tau_T_DA904_DT905 | NAN | NANT | 0 | 0.85 |
| 05 | 1tau_T_DT905_DC906 | BBB | BB00 | 50 | 0.32 |
| 06 | 1tau_T_DC906_DC907 | NAN | NANT | 0 | 0.72 |
| 07 | 1tau_T_DC907_DG908 | BBB | BB00 | 20 | 0.52 |
| 08 | 1tau_P_DG952_DC951 | NAN | NANT | 0 | 0.62 |
| 09 | 1tau_P_DC953_DG952 | AAA | AA00 | 8 | 0.37 |
| 10 | 1tau_P_DT954_DC953 | NAN | NANT | 0 | 0.87 |
| 11 | 1tau_P_DA955_DT954 | B-A | BA08 | 41 | 0.42 |
| 12 | 1tau_P_DG956_DA955 | BBB | BB00 | 60 | 0.41 |
| 13 | 1tau_P_DG957_DG956 | BBB | BB00 | 59 | 0.36 |
| 14 | 1tau_P_DC958_DG957 | NAN | NANT | 0 | 0.60 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|