Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The first left-handed RNA structure of (CGCGCG)2, Z-RNA, NMR, 12 structures, determined in high salt

Results of the assignment of 120 detected steps in 12 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011t4x-m10_A_C1_G2NANNANT00.69 ZZ1S
0021t4x-m11_A_C1_G2NANNANT00.66 ZZ1S
0031t4x-m12_A_C1_G2NANNANT00.71 ZZ1S
0041t4x-m1_A_C1_G2NANNANT00.71 ZZ1S
0051t4x-m2_A_C1_G2NANNANT00.70 ZZ1S
0061t4x-m3_A_C1_G2NANNANT00.72 ZZ1S
0071t4x-m4_A_C1_G2NANNANT00.70 ZZ1S
0081t4x-m5_A_C1_G2NANNANT00.71 ZZ1S
0091t4x-m6_A_C1_G2NANNANT00.72 ZZ1S
0101t4x-m7_A_C1_G2NANNANT00.72 ZZ1S
0111t4x-m8_A_C1_G2NANNANT00.73 ZZ1S
0121t4x-m9_A_C1_G2NANNANT00.71 ZZ1S
0131t4x-m10_A_G2_C3NANNANT00.58 ZZS1
0141t4x-m11_A_G2_C3NANNANT00.57 ZZS1
0151t4x-m12_A_G2_C3NANNANT00.58 ZZS1
0161t4x-m1_A_G2_C3NANNANT00.46 ZZS1
0171t4x-m2_A_G2_C3NANNANT00.52 ZZS1
0181t4x-m3_A_G2_C3NANNANT00.52 ZZS1
0191t4x-m4_A_G2_C3NANNANT00.59 ZZS1
0201t4x-m5_A_G2_C3NANNANT00.60 ZZS1
0211t4x-m6_A_G2_C3NANNANT00.45 ZZS1
0221t4x-m7_A_G2_C3NANNANT00.46 ZZS1
0231t4x-m8_A_G2_C3NANNANT00.50 ZZS1
0241t4x-m9_A_G2_C3NANNANT00.59 ZZS1
0251t4x-m10_A_C3_G4NANNANT00.69 ZZ1S
0261t4x-m11_A_C3_G4NANNANT00.68 ZZ1S
0271t4x-m12_A_C3_G4NANNANT00.70 ZZ1S
0281t4x-m1_A_C3_G4NANNANT00.69 ZZ1S
0291t4x-m2_A_C3_G4NANNANT00.69 ZZ1S
0301t4x-m3_A_C3_G4NANNANT00.69 ZZ1S
0311t4x-m4_A_C3_G4NANNANT00.70 ZZ1S
0321t4x-m5_A_C3_G4NANNANT00.70 ZZ1S
0331t4x-m6_A_C3_G4NANNANT00.69 ZZ1S
0341t4x-m7_A_C3_G4NANNANT00.69 ZZ1S
0351t4x-m8_A_C3_G4NANNANT00.69 ZZ1S
0361t4x-m9_A_C3_G4NANNANT00.71 ZZ1S
0371t4x-m10_A_G4_C5ZZZZZS1380.33 ZZS1
0381t4x-m11_A_G4_C5ZZZZZS1410.32 ZZS1
0391t4x-m12_A_G4_C5ZZZZZS1420.30 ZZS1
0401t4x-m1_A_G4_C5ZZZZZS1420.34 ZZS1
0411t4x-m2_A_G4_C5ZZZZZS1400.32 ZZS1
0421t4x-m3_A_G4_C5ZZZZZS1460.32 ZZS1
0431t4x-m4_A_G4_C5ZZZZZS1410.33 ZZS1
0441t4x-m5_A_G4_C5ZZZZZS1490.31 ZZS1
0451t4x-m6_A_G4_C5ZZZZZS1390.29 ZZS1
0461t4x-m7_A_G4_C5ZZZZZS1370.28 ZZS1
0471t4x-m8_A_G4_C5ZZZZZS1490.31 ZZS1
0481t4x-m9_A_G4_C5ZZZZZS1500.30 ZZS1
0491t4x-m10_A_C5_G6NANNANT00.44 ZZ1S
0501t4x-m11_A_C5_G6NANNANT00.40 ZZ1S
0511t4x-m12_A_C5_G6NANNANT00.47 ZZ1S
0521t4x-m1_A_C5_G6NANNANT00.43 ZZ1S
0531t4x-m2_A_C5_G6NANNANT00.41 ZZ1S
0541t4x-m3_A_C5_G6NANNANT00.43 ZZ1S
0551t4x-m4_A_C5_G6NANNANT00.42 ZZ1S
0561t4x-m5_A_C5_G6NANNANT00.41 ZZ1S
0571t4x-m6_A_C5_G6NANNANT00.53 ZZ1S
0581t4x-m7_A_C5_G6NANNANT00.53 ZZ1S
0591t4x-m8_A_C5_G6NANNANT00.47 ZZ1S
0601t4x-m9_A_C5_G6NANNANT00.46 ZZ1S
0611t4x-m10_B_C7_G8NANNANT00.72 ZZ1S
0621t4x-m11_B_C7_G8NANNANT00.71 ZZ1S
0631t4x-m12_B_C7_G8NANNANT00.72 ZZ1S
0641t4x-m1_B_C7_G8NANNANT00.69 ZZ1S
0651t4x-m2_B_C7_G8NANNANT00.71 ZZ1S
0661t4x-m3_B_C7_G8NANNANT00.70 ZZ1S
0671t4x-m4_B_C7_G8NANNANT00.72 ZZ1S
0681t4x-m5_B_C7_G8NANNANT00.70 ZZ1S
0691t4x-m6_B_C7_G8NANNANT00.73 ZZ1S
0701t4x-m7_B_C7_G8NANNANT00.74 ZZ1S
0711t4x-m8_B_C7_G8NANNANT00.69 ZZ1S
0721t4x-m9_B_C7_G8NANNANT00.70 ZZ1S
0731t4x-m10_B_G8_C9NANNANT00.54 ZZS1
0741t4x-m11_B_G8_C9NANNANT00.59 ZZS1
0751t4x-m12_B_G8_C9NANNANT00.54 ZZS1
0761t4x-m1_B_G8_C9NANNANT00.59 ZZS1
0771t4x-m2_B_G8_C9NANNANT00.58 ZZS1
0781t4x-m3_B_G8_C9NANNANT00.58 ZZS1
0791t4x-m4_B_G8_C9NANNANT00.59 ZZS1
0801t4x-m5_B_G8_C9NANNANT00.59 ZZS1
0811t4x-m6_B_G8_C9NANNANT00.47 ZZS1
0821t4x-m7_B_G8_C9NANNANT00.47 ZZS1
0831t4x-m8_B_G8_C9NANNANT00.59 ZZS1
0841t4x-m9_B_G8_C9NANNANT00.59 ZZS1
0851t4x-m10_B_C9_G10NANNANT00.71 ZZ1S
0861t4x-m11_B_C9_G10NANNANT00.69 ZZ1S
0871t4x-m12_B_C9_G10NANNANT00.69 ZZ1S
0881t4x-m1_B_C9_G10NANNANT00.68 ZZ1S
0891t4x-m2_B_C9_G10NANNANT00.69 ZZ1S
0901t4x-m3_B_C9_G10NANNANT00.69 ZZ1S
0911t4x-m4_B_C9_G10NANNANT00.70 ZZ1S
0921t4x-m5_B_C9_G10NANNANT00.70 ZZ1S
0931t4x-m6_B_C9_G10NANNANT00.68 ZZ1S
0941t4x-m7_B_C9_G10NANNANT00.68 ZZ1S
0951t4x-m8_B_C9_G10NANNANT00.68 ZZ1S
0961t4x-m9_B_C9_G10NANNANT00.70 ZZ1S
0971t4x-m10_B_G10_C11ZZZZZS1460.33 ZZS1
0981t4x-m11_B_G10_C11ZZZZZS1440.32 ZZS1
0991t4x-m12_B_G10_C11ZZZZZS1480.31 ZZS1
1001t4x-m1_B_G10_C11ZZZZZS1480.28 ZZS1
1011t4x-m2_B_G10_C11ZZZZZS1350.31 ZZS1
1021t4x-m3_B_G10_C11ZZZZZS1350.31 ZZS1
1031t4x-m4_B_G10_C11ZZZZZS1430.32 ZZS1
1041t4x-m5_B_G10_C11ZZZZZS1490.31 ZZS1
1051t4x-m6_B_G10_C11ZZZZZS1370.29 ZZS1
1061t4x-m7_B_G10_C11ZZZZZS1360.30 ZZS1
1071t4x-m8_B_G10_C11ZZZZZS1290.32 ZZS1
1081t4x-m9_B_G10_C11ZZZZZS1460.31 ZZS1
1091t4x-m10_B_C11_G12NANNANT00.42 ZZ1S
1101t4x-m11_B_C11_G12NANNANT00.36 ZZ1S
1111t4x-m12_B_C11_G12NANNANT00.44 ZZ1S
1121t4x-m1_B_C11_G12NANNANT00.52 ZZ1S
1131t4x-m2_B_C11_G12NANNANT00.46 ZZ1S
1141t4x-m3_B_C11_G12NANNANT00.46 ZZ1S
1151t4x-m4_B_C11_G12NANNANT00.40 ZZ1S
1161t4x-m5_B_C11_G12NANNANT00.44 ZZ1S
1171t4x-m6_B_C11_G12NANNANT00.52 ZZ1S
1181t4x-m7_B_C11_G12NANNANT00.53 ZZ1S
1191t4x-m8_B_C11_G12NANNANT00.47 ZZ1S
1201t4x-m9_B_C11_G12NANNANT00.44 ZZ1S

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N