Conformers:
ABBIImiBZICOPNSYNN
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HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE COVALENTLY CROSSLINKED TO DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1t39_C_DG1_DC2 | BBB | BB00 | 38 | 0.35 |
| 02 | 1t39_C_DC2_DC3 | BBB | BB00 | 14 | 0.26 |
| 03 | 1t39_C_DC3_DA4 | B12 | BB04 | 44 | 0.23 |
| 04 | 1t39_C_DA4_DT5 | BBw | BB02 | 53 | 0.25 |
| 05 | 1t39_C_DT5_DG6 | BBB | BB00 | 59 | 0.41 |
| 06 | 1t39_C_DG6_E1X7 | NAN | NANT | 0 | 0.54 |
| 07 | 1t39_C_E1X7_DC8 | NAN | NANT | 0 | 1.03 |
| 08 | 1t39_C_DC8_DT9 | BBw | BB02 | 79 | 0.18 |
| 09 | 1t39_C_DT9_DA10 | B12 | BB04 | 69 | 0.44 |
| 10 | 1t39_C_DA10_DG11 | BBB | BB00 | 63 | 0.27 |
| 11 | 1t39_C_DG11_DT12 | BBB | BB00 | 70 | 0.18 |
| 12 | 1t39_C_DT12_DA13 | BBB | BB00 | 22 | 0.40 |
| 13 | 1t39_D_DT14_DA15 | BBB | BB00 | 32 | 0.48 |
| 14 | 1t39_D_DA15_DC16 | BBB | BB00 | 46 | 0.41 |
| 15 | 1t39_D_DC16_DT17 | BBB | BB00 | 12 | 0.45 |
| 16 | 1t39_D_DT17_DA18 | miB | BB10 | 45 | 0.48 |
| 17 | 1t39_D_DA18_DG19 | BBw | BB11 | 48 | 0.35 |
| 18 | 1t39_D_DG19_DC20 | NAN | NANT | 0 | 0.68 |
| 19 | 1t39_D_DC20_DC21 | NAN | NANT | 0 | 0.46 |
| 20 | 1t39_D_DC21_DA22 | B12 | BB04 | 18 | 0.51 |
| 21 | 1t39_D_DA22_DT23 | miB | BB13 | 33 | 0.40 |
| 22 | 1t39_D_DT23_DG24 | BBB | BB00 | 44 | 0.44 |
| 23 | 1t39_D_DG24_DG25 | BBw | BB02 | 64 | 0.32 |
| 24 | 1t39_D_DG25_DC26 | BBB | BB00 | 12 | 0.26 |
| 25 | 1t39_E_DG1_DC2 | BBB | BB00 | 48 | 0.45 |
| 26 | 1t39_E_DC2_DC3 | BBw | BB02 | 39 | 0.28 |
| 27 | 1t39_E_DC3_DA4 | BBB | BB00 | 50 | 0.36 |
| 28 | 1t39_E_DA4_DT5 | BBw | BB02 | 76 | 0.26 |
| 29 | 1t39_E_DT5_DG6 | B12 | BB04 | 55 | 0.43 |
| 30 | 1t39_E_DG6_E1X7 | NAN | NANT | 0 | 0.50 |
| 31 | 1t39_E_E1X7_DC8 | NAN | NANT | 0 | 0.99 |
| 32 | 1t39_E_DC8_DT9 | BBw | BB02 | 72 | 0.25 |
| 33 | 1t39_E_DT9_DA10 | BBB | BB00 | 44 | 0.53 |
| 34 | 1t39_E_DA10_DG11 | BBw | BB02 | 36 | 0.31 |
| 35 | 1t39_E_DG11_DT12 | BBB | BB00 | 41 | 0.37 |
| 36 | 1t39_E_DT12_DA13 | BBB | BB00 | 17 | 0.39 |
| 37 | 1t39_F_DT14_DA15 | BBB | BB00 | 44 | 0.39 |
| 38 | 1t39_F_DA15_DC16 | B12 | BB04 | 50 | 0.24 |
| 39 | 1t39_F_DC16_DT17 | NAN | NANT | 0 | 0.44 |
| 40 | 1t39_F_DT17_DA18 | BBB | BB00 | 53 | 0.45 |
| 41 | 1t39_F_DA18_DG19 | BBw | BB11 | 48 | 0.39 |
| 42 | 1t39_F_DG19_DC20 | NAN | NANT | 0 | 0.65 |
| 43 | 1t39_F_DC20_DC21 | NAN | NANT | 0 | 0.38 |
| 44 | 1t39_F_DC21_DA22 | BB2 | BB07 | 51 | 0.41 |
| 45 | 1t39_F_DA22_DT23 | miB | BB13 | 18 | 0.40 |
| 46 | 1t39_F_DT23_DG24 | BBB | BB00 | 21 | 0.57 |
| 47 | 1t39_F_DG24_DG25 | BBB | BB00 | 64 | 0.30 |
| 48 | 1t39_F_DG25_DC26 | BBB | BB00 | 18 | 0.44 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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