Conformers:
ABBIImiBZICOPNSYNN
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Crystal Structure of 2-aminopurine labelled bacterial decoding site RNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 37 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1t0e_A_G1_G2 | AAA | AA00 | 70 | 0.21 |
| 02 | 1t0e_A_G2_U3 | AAA | AA00 | 69 | 0.26 |
| 03 | 1t0e_A_U3_G4 | AAA | AA00 | 93 | 0.11 |
| 04 | 1t0e_A_G4_G5 | AAA | AA00 | 92 | 0.15 |
| 05 | 1t0e_A_G5_U6 | AAA | AA00 | 58 | 0.10 |
| 06 | 1t0e_A_U6_G7 | AAA | AA00 | 64 | 0.20 |
| 07 | 1t0e_A_G7_A.A8 | NAN | NANT | 0 | 1.25 |
| 08 | 1t0e_A_G7_A.B8 | AAA | AA08 | 62 | 0.32 |
| 09 | 1t0e_A_A.A8_A.A9 | AAA | AA04 | 38 | 0.49 |
| 10 | 1t0e_A_A.B8_A.B9 | NAN | NANT | 0 | 1.05 |
| 11 | 1t0e_A_A.A9_G.A10 | OPN | OP31 | 36 | 0.43 |
| 12 | 1t0e_A_A.B9_G.B10 | NAN | NANT | 0 | 0.82 |
| 13 | 1t0e_A_G.A10_U11 | AAA | AA00 | 33 | 0.43 |
| 14 | 1t0e_A_G.B10_U11 | AAA | AA00 | 71 | 0.30 |
| 15 | 1t0e_A_U11_C12 | A-B | AB05 | 76 | 0.21 |
| 16 | 1t0e_A_C12_G13 | B-A | BA16 | 39 | 0.44 |
| 17 | 1t0e_A_G13_C14 | AAA | AA00 | 81 | 0.10 |
| 18 | 1t0e_A_C14_U15 | AAA | AA00 | 94 | 0.18 |
| 19 | 1t0e_A_U15_C16 | AAA | AA00 | 85 | 0.14 |
| 20 | 1t0e_A_C16_G17 | AAw | AA01 | 88 | 0.15 |
| 21 | 1t0e_A_G17_G18 | AAA | AA00 | 54 | 0.27 |
| 22 | 1t0e_C_C9_G10 | AAA | AA00 | 38 | 0.30 |
| 23 | 1t0e_C_G10_A11 | AAA | AA00 | 93 | 0.16 |
| 24 | 1t0e_C_A11_G12 | AAA | AA00 | 87 | 0.16 |
| 25 | 1t0e_C_G12_C13 | AAA | AA00 | 92 | 0.13 |
| 26 | 1t0e_C_C13_G14 | AAA | AA00 | 80 | 0.21 |
| 27 | 1t0e_C_G14_U15 | AAA | AA00 | 51 | 0.36 |
| 28 | 1t0e_C_U15_C16 | AAA | AA08 | 89 | 0.15 |
| 29 | 1t0e_C_C16_A17 | AAw | AA01 | 87 | 0.14 |
| 30 | 1t0e_C_A17_C18 | AAA | AA00 | 72 | 0.24 |
| 31 | 1t0e_C_C18_A19 | AAA | AA00 | 92 | 0.10 |
| 32 | 1t0e_C_A19_C20 | AAA | AA00 | 75 | 0.13 |
| 33 | 1t0e_C_C20_C21 | AAA | AA00 | 87 | 0.15 |
| 34 | 1t0e_C_C21_A22 | AAA | AA00 | 87 | 0.12 |
| 35 | 1t0e_C_A22_C23 | AAw | AA01 | 40 | 0.22 |
| 36 | 1t0e_C_C23_C24 | AAA | AA00 | 66 | 0.21 |
| 37 | 1t0e_C_C24_C25 | AAA | AA00 | 92 | 0.18 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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