Conformers:
ABBIImiBZICOPNSYNN
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NFKB P50 HOMODIMER BOUND TO DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1svc_D_DA1_DG2 | NAN | NANT | 0 | 0.69 |
| 02 | 1svc_D_DG2_DA3 | B12 | BB04 | 66 | 0.28 |
| 03 | 1svc_D_DA3_DT4 | B-A | BA05 | 68 | 0.36 |
| 04 | 1svc_D_DT4_DG5 | NAN | NANT | 0 | 0.83 |
| 05 | 1svc_D_DG5_DG6 | BBB | BB01 | 53 | 0.32 |
| 06 | 1svc_D_DG6_DG7 | BBB | BB00 | 46 | 0.44 |
| 07 | 1svc_D_DG7_DG8 | BBB | BB00 | 58 | 0.30 |
| 08 | 1svc_D_DG8_DA9 | B12 | BB04 | 42 | 0.23 |
| 09 | 1svc_D_DA9_DA10 | BBB | BB00 | 60 | 0.30 |
| 10 | 1svc_D_DA10_DT11 | B-A | BA05 | 80 | 0.24 |
| 11 | 1svc_D_DT11_DC12 | BBB | BB01 | 58 | 0.26 |
| 12 | 1svc_D_DC12_DC13 | BBB | BB00 | 17 | 0.38 |
| 13 | 1svc_D_DC13_DC14 | BBB | BB00 | 39 | 0.24 |
| 14 | 1svc_D_DC14_DC15 | B-A | BA08 | 79 | 0.31 |
| 15 | 1svc_D_DC15_DT16 | A-B | AB03 | 66 | 0.35 |
| 16 | 1svc_D_DT16_DA17 | NAN | NANT | 0 | 0.45 |
| 17 | 1svc_D_DA17_DG18 | NAN | NANT | 0 | 1.48 |
| 18 | 1svc_D_DG18_DA19 | NAN | NANT | 0 | 1.45 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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