DNATCO v4.1: results

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Cobalt Hexammine solution

Results of the assignment of 73 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1sjf_B_A99_U100	AAw	AA11	82	0.28	AA11
02	1sjf_B_U100_G101	NAN	NANT	0	1.01	OP05
03	1sjf_B_G101_G102	AAA	AA00	7	0.46	AA00
04	1sjf_B_G102_C103	AAA	AA00	44	0.41	AA00
05	1sjf_B_C103_C104	AAA	AA00	65	0.29	AA00
06	1sjf_B_C104_G105	AAA	AA00	80	0.25	AA00
07	1sjf_B_G105_G106	AAA	AA00	57	0.27	AA00
08	1sjf_B_G106_C107	AAA	AA00	86	0.23	AA00
09	1sjf_B_C107_A108	AAA	AA00	78	0.31	AA00
10	1sjf_B_A108_U109	AAA	AA00	50	0.34	AA00
11	1sjf_B_U109_G110	NAN	NANT	0	0.80	OP29
12	1sjf_B_G110_G111	AAA	AA00	57	0.29	AA00
13	1sjf_B_G111_U112	AAA	AA00	47	0.21	AA00
14	1sjf_B_U112_C113	AAw	AA01	78	0.19	AA01
15	1sjf_B_C113_C114	AAA	AA00	57	0.25	AA00
16	1sjf_B_C114_C115	AAA	AA00	81	0.19	AA00
17	1sjf_B_C115_A116	AAA	AA00	71	0.22	AA00
18	1sjf_B_A116_G117	AAA	AA00	88	0.15	AA00
19	1sjf_B_G117_C118	AAA	AA00	83	0.17	AA00
20	1sjf_B_C118_C119	AAA	AA00	76	0.31	AA00
21	1sjf_B_C119_U120	A-B	AB05	81	0.18	AB05
22	1sjf_B_U120_C121	OPN	OP13	29	0.86	OP13
23	1sjf_B_C121_C122	AAw	AA01	80	0.22	AA01
24	1sjf_B_C122_U123	NAN	NANT	0	1.38	OP06
25	1sjf_B_U123_C124	NAN	NANT	0	1.56	OP31
26	1sjf_B_C124_G125	NAN	NANT	0	0.98	BA16
27	1sjf_B_G125_C126	NAN	NANT	0	1.63	OP24
28	1sjf_B_C126_U127	NAN	NANT	0	0.87	OP30
29	1sjf_B_U127_G128	NAN	NANT	0	1.25	OP31
30	1sjf_B_G128_G129	AAA	AA00	84	0.22	AA00
31	1sjf_B_G129_C130	AAA	AA00	84	0.15	AA00
32	1sjf_B_C130_G131	NAN	NANT	0	0.93	OP31
33	1sjf_B_G131_C132	AAA	AA00	34	0.27	AA00
34	1sjf_B_C132_C133	AAA	AA00	82	0.26	AA00
35	1sjf_B_C133_G134	AAA	AA00	49	0.35	AA00
36	1sjf_B_G134_G135	AAA	AA00	65	0.24	AA00
37	1sjf_B_G135_C136	AAA	AA04	29	0.53	AA04
38	1sjf_B_C136_U137	AAA	AA00	81	0.15	AA00
39	1sjf_B_U137_G138	AAu	AA12	69	0.24	AA12
40	1sjf_B_G138_G139	AAA	AA00	82	0.22	AA00
41	1sjf_B_G139_G140	AAA	AA00	86	0.17	AA00
42	1sjf_B_G140_C141	NAN	NANT	0	0.75	BB12
43	1sjf_B_C141_A142	NAN	NANT	0	0.51	OP26
44	1sjf_B_A142_A143	AAA	AA00	72	0.14	AA00
45	1sjf_B_A143_C144	AAA	AA00	76	0.19	AA00
46	1sjf_B_C144_A145	AAA	AA08	77	0.18	AA08
47	1sjf_B_A145_C146	AAA	AA00	95	0.13	AA00
48	1sjf_B_C146_C147	AAA	AA00	92	0.17	AA00
49	1sjf_B_C147_A148	AAA	AA00	79	0.24	AA00
50	1sjf_B_A148_U149	AAA	AA00	92	0.24	AA00
51	1sjf_B_U149_U150	ICL	IC02	90	0.15	IC02
52	1sjf_B_U150_G151	NAN	NANT	0	0.66	ZZ02
53	1sjf_B_G151_C152	NAN	NANT	0	0.86	IC02
54	1sjf_B_C152_A153	NAN	NANT	0	1.04	BA08
55	1sjf_B_A153_C154	AAA	AA00	81	0.19	AA00
56	1sjf_B_C154_U155	NAN	NANT	0	0.55	OP21
57	1sjf_B_U155_C156	NAN	NANT	0	0.44	OP26
58	1sjf_B_C156_C157	AAA	AA00	42	0.30	AA00
59	1sjf_B_C157_G158	NAN	NANT	0	1.58	OP11
60	1sjf_B_G158_G159	AAA	AA00	77	0.20	AA00
61	1sjf_B_G159_U160	AAA	AA00	91	0.12	AA00
62	1sjf_B_U160_G161	AAA	AA00	95	0.19	AA00
63	1sjf_B_G161_G162	AAA	AA00	31	0.31	AA00
64	1sjf_B_G162_U163	NAN	NANT	0	2.09	OP06
65	1sjf_B_U163_G164	NAN	NANT	0	2.00	OP14
66	1sjf_B_G164_A165	NAN	NANT	0	1.74	OP16
67	1sjf_B_A165_A166	AAA	AA09	50	0.24	AA09
68	1sjf_B_A166_U167	NAN	NANT	0	0.60	IC07
69	1sjf_B_U167_G168	AAw	AA01	26	0.36	AA01
70	1sjf_B_G168_G169	AAA	AA00	87	0.18	AA00
71	1sjf_B_G169_G170	AAA	AA00	53	0.27	AA00
72	1sjf_B_G170_A171	AAA	AA00	53	0.30	AA00
73	1sjf_B_A171_C172	AAw	AA01	55	0.23	AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 73 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible