DNATCO v4.1: results

Crystal structure of a C75U mutant Hepatitis Delta Virus ribozyme precursor, in Cu2+ solution

Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1sj4_R_U100_G101	NAN	NANT	0	2.51	OP01
02	1sj4_R_G101_G102	NAN	NANT	0	0.48	AA08
03	1sj4_R_G102_C103	AAA	AA00	11	0.35	AA00
04	1sj4_R_C103_C104	AAA	AA00	11	0.30	AA00
05	1sj4_R_C104_G105	AAA	AA00	32	0.33	AA00
06	1sj4_R_G105_G106	AAA	AA00	80	0.19	AA00
07	1sj4_R_G106_C107	AAA	AA00	76	0.20	AA00
08	1sj4_R_C107_A108	AAA	AA00	87	0.20	AA00
09	1sj4_R_A108_U109	AAA	AA00	82	0.25	AA00
10	1sj4_R_U109_G110	NAN	NANT	0	1.34	OP17
11	1sj4_R_G110_G111	AAA	AA00	85	0.20	AA00
12	1sj4_R_G111_U112	AAA	AA00	72	0.15	AA00
13	1sj4_R_U112_C113	AAw	AA10	15	0.40	AA10
14	1sj4_R_C113_C114	AAA	AA08	42	0.30	AA08
15	1sj4_R_C114_C115	AAA	AA00	77	0.22	AA00
16	1sj4_R_C115_A116	AAA	AA00	92	0.17	AA00
17	1sj4_R_A116_G117	AAA	AA00	84	0.15	AA00
18	1sj4_R_G117_C118	AAA	AA00	86	0.22	AA00
19	1sj4_R_C118_C119	AAA	AA00	85	0.23	AA00
20	1sj4_R_C119_U120	A-B	AB05	89	0.19	AB05
21	1sj4_R_U120_C121	OPN	OP13	47	0.78	OP13
22	1sj4_R_C121_C122	AAw	AA01	42	0.41	AA01
23	1sj4_R_C122_U123	NAN	NANT	0	1.93	OP19
24	1sj4_R_U123_C124	NAN	NANT	0	1.24	OP31
25	1sj4_R_C124_G125	NAN	NANT	0	1.05	BA16
26	1sj4_R_G125_C126	NAN	NANT	0	1.35	OP24
27	1sj4_R_C126_U127	NAN	NANT	0	0.91	OP29
28	1sj4_R_U127_G128	NAN	NANT	0	1.20	OP31
29	1sj4_R_G128_G129	AAA	AA08	86	0.20	AA08
30	1sj4_R_G129_C130	AAA	AA00	96	0.12	AA00
31	1sj4_R_C130_G131	NAN	NANT	0	0.91	OP31
32	1sj4_R_G131_C132	AAA	AA00	57	0.22	AA00
33	1sj4_R_C132_C133	AAA	AA00	91	0.25	AA00
34	1sj4_R_C133_G134	AAA	AA00	66	0.31	AA00
35	1sj4_R_G134_G135	AAA	AA00	82	0.22	AA00
36	1sj4_R_G135_C136	AAA	AA00	58	0.23	AA00
37	1sj4_R_C136_U137	AAA	AA00	84	0.27	AA00
38	1sj4_R_U137_G138	AAu	AA12	94	0.09	AA12
39	1sj4_R_G138_G139	AAA	AA00	73	0.24	AA00
40	1sj4_R_G139_G140	AAA	AA00	92	0.15	AA00
41	1sj4_R_G140_C141	NAN	NANT	0	1.03	OP08
42	1sj4_R_C141_A142	NAN	NANT	0	0.49	OP26
43	1sj4_R_A142_A143	AAA	AA00	80	0.15	AA00
44	1sj4_R_A143_C144	AAA	AA00	80	0.19	AA00
45	1sj4_R_C144_A145	AAA	AA00	98	0.14	AA00
46	1sj4_R_A145_C146	AAA	AA00	90	0.13	AA00
47	1sj4_R_C146_C147	AAA	AA00	89	0.19	AA00
48	1sj4_R_C147_A148	AAA	AA00	73	0.25	AA00
49	1sj4_R_A148_U149	AAA	AA00	93	0.19	AA00
50	1sj4_R_U149_U150	ICL	IC02	89	0.13	IC02
51	1sj4_R_U150_G151	ZZZ	ZZ02	72	0.60	ZZ02
52	1sj4_R_G151_C152	NAN	NANT	0	0.79	IC02
53	1sj4_R_C152_A153	NAN	NANT	0	0.94	AA12
54	1sj4_R_A153_C154	AAA	AA00	81	0.22	AA00
55	1sj4_R_C154_U155	NAN	NANT	0	0.55	OP21
56	1sj4_R_U155_C156	NAN	NANT	0	0.40	OP26
57	1sj4_R_C156_C157	AAA	AA00	80	0.25	AA00
58	1sj4_R_C157_G158	NAN	NANT	0	1.55	OP17
59	1sj4_R_G158_G159	AAA	AA00	69	0.16	AA00
60	1sj4_R_G159_U160	AAA	AA00	96	0.10	AA00
61	1sj4_R_U160_G161	AAA	AA00	94	0.19	AA00
62	1sj4_R_G161_G162	A-B	AB05	34	0.28	AB05
63	1sj4_R_G162_U163	NAN	NANT	0	1.75	OP07
64	1sj4_R_U163_G164	NAN	NANT	0	1.97	OP14
65	1sj4_R_G164_A165	NAN	NANT	0	1.74	OP16
66	1sj4_R_A165_A166	AAA	AA09	67	0.19	AA09
67	1sj4_R_A166_U167	NAN	NANT	0	0.73	IC07
68	1sj4_R_U167_G168	AAw	AA01	26	0.30	AA01
69	1sj4_R_G168_G169	AAA	AA00	88	0.24	AA00
70	1sj4_R_G169_G170	AAA	AA00	88	0.21	AA00
71	1sj4_R_G170_A171	AAA	AA00	95	0.13	AA00
72	1sj4_R_A171_C172	AAw	AA06	70	0.20	AA06

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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